PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 29215.6 Da PI: 8.9145 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.2 | 4.7e-16 | 10 | 105 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l++++ ++ + +pkkfa+eh + s +++l+ ++g+ W v+l + ++ ++++kGW++F + + g f++F+l ++s+f +v + Lus10038189 10 FFKILLQHNIEAN-YMLIPKKFAKEHCRD--LSNQIILKVPNGEAWPVELVRDELAKGglVWFGKGWQKFSERYCFRHGHFLLFELLHNSSF--LVLI 102 8899977666666.5***********444..5567***************8744444456****************************9*99..9999 PP E-S CS B3 97 frk 99 f++ Lus10038189 103 FNR 105 987 PP | |||||||
2 | B3 | 51.6 | 1.7e-16 | 179 | 255 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +pkkf+e + +++s +++ +g++W vkl++ ++ + + l++GW +F+++n+Lk+gD+++F+l + ++f +v+++ Lus10038189 179 AVPKKFVEMYV--TTSSEKMVELKFDGETWPVKLKIYQQASYCQLSEGWVQFARDNNLKAGDTCTFELASATSF--NVHIY 255 58*****9995..345556666778*********7777777799***********************9988888..77766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.3E-23 | 7 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-22 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-19 | 8 | 104 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 9 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-16 | 10 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-13 | 10 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 162 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.493 | 163 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-9 | 168 | 257 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.20E-19 | 173 | 256 | No hit | No description |
SuperFamily | SSF101936 | 7.06E-19 | 179 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-14 | 180 | 256 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDSPWGGPRF FKILLQHNIE ANYMLIPKKF AKEHCRDLSN QIILKVPNGE AWPVELVRDE 60 LAKGGLVWFG KGWQKFSERY CFRHGHFLLF ELLHNSSFLV LIFNRTAAEI GYSKQDWELA 120 QTETMLESSD AATDVAGKDE NLASTKKTPV VVSKKLTSQR ASKSSAAIVN VLPSFKKPAV 180 PKKFVEMYVT TSSEKMVELK FDGETWPVKL KIYQQASYCQ LSEGWVQFAR DNNLKAGDTC 240 TFELASATSF NVHIYRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038189 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10038189 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 7e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10038189 |