PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29705.5 Da PI: 9.787 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.8e-09 | 11 | 42 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg W +eEd++l +v+ +G g+W+t++++ g Lus10038092 11 RGLWKPEEDLILRMYVQTHGEGNWATVSAKSG 42 788*************************9987 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.4e-15 | 95 | 140 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E++l+++ +k+ G++ W++Ia +++ gRt++++k++w+++l Lus10038092 95 RGDMSDQEQDLIIRMHKLVGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 140 7889******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.49 | 6 | 89 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 7 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-7 | 9 | 43 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-9 | 10 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-7 | 11 | 41 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.25E-5 | 14 | 89 | No hit | No description |
SuperFamily | SSF46689 | 8.58E-19 | 75 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.798 | 90 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 93 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 95 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-10 | 98 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDDDTQQVKK RGLWKPEEDL ILRMYVQTHG EGNWATVSAK SGLSSSSSSS SQLDWATSSF 60 SLCYSYTNAG FTGLKRGGKS CRLRWKNYLR PNIKRGDMSD QEQDLIIRMH KLVGNRWSLI 120 AGRLPGRTDN EVKNYWNTHL NNKRLSRVNK RPKMMNSNKN HRRSFKDEKP PQDSRLVSGI 180 KPTFTIVEDN QTTATDEAWI EAARNMNSYL IESPMPAAAR DTALMLDTND PFMPYLDPYL 240 FFPQPFESFI GDRDAFFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-18 | 76 | 143 | 40 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038092 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ230811 | 5e-60 | HQ230811.1 Linum usitatissimum clone 00101 microsatellite sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015579667.1 | 6e-67 | transcription factor MYB82 | ||||
Refseq | XP_021634922.1 | 4e-67 | transcription factor MYB82-like isoform X1 | ||||
Swissprot | Q9LTF7 | 1e-57 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A2C9ULU2 | 8e-66 | A0A2C9ULU2_MANES; Uncharacterized protein | ||||
STRING | Lus10038092 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 3e-58 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Lus10038092 |