PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037994
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 393aa    MW: 42566.6 Da    PI: 5.157
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037994genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-18294327134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +tkTp+WR gp g+ktLCnaCG+++++ +
  Lus10037994 294 CMHCEVTKTPQWRAGPMGPKTLCNACGVRFKSGR 327
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.596288324IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-16288338IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14292325IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.76E-14292351No hitNo description
CDDcd002021.24E-14293340No hitNo description
PfamPF003204.1E-16294327IPR000679Zinc finger, GATA-type
PROSITE patternPS003440294319IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVGQTTSSSS LNFMEELDFF DQMDDLIDFP SDDLIDFPSD DIDAILSCPG GGDAVKPNFF  60
SAADNKTDDD GTSSFLPPSI WAAHPGSDPG FPNHSASDLS AELSVPYEDI VQLEWLSTFV  120
EDSFSGGSLT MDKNGCSSFL DKDLSSSLSH GQHFRTSSPV SVLESSSSCS GDQKAEANVG  180
AGKCGRARSK RPRPATFTPR PPMQHLISPT SSITETVTPN GVCLAPKAHS DSENYAESRL  240
LIKIPKHLLS EHKTEPKKKK KKVKVTAPTP PAPAREEESN NSEQQQQQQA VRKCMHCEVT  300
KTPQWRAGPM GPKTLCNACG VRFKSGRLFP EYRPAASPTF VPTLHSNSHK KVVEMRTKVA  360
GDEMFGIDDG SMIPDSPELL IPGNNLALEE YM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041012.11e-126PREDICTED: GATA transcription factor 8-like
RefseqXP_011041013.11e-126PREDICTED: GATA transcription factor 8-like
TrEMBLA0A2I4KL321e-124A0A2I4KL32_POPTR; GATA transcription factor
TrEMBLA0A2K1YYK81e-123A0A2K1YYK8_POPTR; Uncharacterized protein
STRINGLus100379940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-43GATA family protein