PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037785
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 362aa    MW: 39056 Da    PI: 5.4398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037785genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.3e-33195253159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp+vv++tYeg+H h+
  Lus10037785 195 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSHDDPTVVVTTYEGQHVHP 253
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-35180255IPR003657WRKY domain
SuperFamilySSF1182902.62E-29187255IPR003657WRKY domain
PROSITE profilePS5081132.937190255IPR003657WRKY domain
SMARTSM007741.0E-38195254IPR003657WRKY domain
PfamPF031068.4E-27196253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAKSSDQKNP AANSLPYMMT SSSGQLEEMI QSGSGFASPG GFFFDTPMMT PANNGFGGFM  60
ELLDVNGVNG GGDGQDFSGY SSSLFDLFQT PMFPPSTAPD LAMESPAGEL SSEVVNNPAT  120
PNSSSISSSS NEAGNSNKNN NKAGLKAEEG VVEEEEEDEE KNSSNKKQLK AKKKPQKKQR  180
EPRFAFMTKS EVDHLDDGYR WRKYGQKAVK NSPYPRSYYR CTSAGCGVKK RVERSHDDPT  240
VVVTTYEGQH VHPSPITPRG SLIGSGGFGV NNYLPGQNQY QLQQHAYNMY TSIPSLHVST  300
SAGTPSTSTP PGTTTSSPCS ASFLNNQSSA TNFLRDNGLL QDIIVPSQMT VVEPKEEEQR  360
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29185255777Probable WRKY transcription factor 4
2lex_A3e-29185255777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037785
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606509.11e-85probable WRKY transcription factor 48
SwissprotQ9FGZ46e-52WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A2C9W9E52e-84A0A2C9W9E5_MANES; Uncharacterized protein
STRINGLus100377850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]