PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037758
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 573aa    MW: 64835.1 Da    PI: 4.5285
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037758genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.49.8e-892015673373
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl...fsevsPilkfs 94 
                  e Ll +Ae + ++++e+a +lL++   ++s +gdp+qRl+ yf +AL +r+ r++++  k+++ s++ +k    +            f+e  P+ ++s
  Lus10037758 201 EFLLMAAEKIGDEQFERAGSLLTECDLQSSATGDPVQRLVYYFSRALWERIDRQTKQ--KTVEKSPKIPKVqamMMPPRE---CfleFYEKVPFAQVS 293
                  67999************************************************4433..333333333222011333333...2455*********** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   ++a qa++++v++++r+Hi+Df+i++G QW  ++qaL sR e+p  +l+iT++g      ke+leetg+rL  fAe+++++f f+++++++l dl+ 
  Lus10037758 294 EFAAIQAVVDSVATSRRIHIVDFNIKNGEQWTIFMQALVSRVENPVdHLKITAIGT---MGKEMLEETGKRLIGFAEAMELSFTFKLVMVEDLLDLKE 388
                  *****************************************966555*********...68************************************* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  e+++++ +E++aV + +   +l     s   + d v+k++++++P v+vv+e e++hns+ F++rf+eal y+sa fd+le+ + r++ +r++ E  +
  Lus10037758 389 EMFEIDCDETVAVLSEYLFTTLI----SFVVKLDYVMKMIWKIKPCVMVVTEVESNHNSPIFVNRFIEALFYVSAYFDCLETCMERDNPHRKFAESSF 482
                  ****************9666666....55555677*************************************************************** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +g+  + vva+eg+er  r+ ++  Wr+ ++++G++++ ls +   qa+l+ +k++ ++  +v+ + +sl+ gWk+ p+ sv+aW
  Lus10037758 483 FGEGTKIVVANEGEERAIRNVKMDVWRAYFRRFGMEEADLSLSCLYQAELVAKKFPcWRSCTVDVDGKSLIVGWKGTPIHSVTAW 567
                  ************************************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.7173547IPR005202Transcription factor GRAS
PfamPF035143.4E-86201567IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAHQISSFQF NHGGIQDQNP AVSNQSFDSD PISLFESWIV AREDSSDRDH QSLFPSYDND  60
EDYPPIHHQS IMITDPQGIS DDFNGIVNRQ VSVDSSDEQI INGNHEIPNS DSASSLFDML  120
RAGRNGSRKR NSSFRTVHKS SDDSVIDADD SVGLSTEELI RIAGAKFIHL SSESGDSVTS  180
SFDLTFSGLS DEELKNVELA EFLLMAAEKI GDEQFERAGS LLTECDLQSS ATGDPVQRLV  240
YYFSRALWER IDRQTKQKTV EKSPKIPKVQ AMMMPPRECF LEFYEKVPFA QVSEFAAIQA  300
VVDSVATSRR IHIVDFNIKN GEQWTIFMQA LVSRVENPVD HLKITAIGTM GKEMLEETGK  360
RLIGFAEAME LSFTFKLVMV EDLLDLKEEM FEIDCDETVA VLSEYLFTTL ISFVVKLDYV  420
MKMIWKIKPC VMVVTEVESN HNSPIFVNRF IEALFYVSAY FDCLETCMER DNPHRKFAES  480
SFFGEGTKIV VANEGEERAI RNVKMDVWRA YFRRFGMEEA DLSLSCLYQA ELVAKKFPCW  540
RSCTVDVDGK SLIVGWKGTP IHSVTAWNFN YG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-3520756827379Protein SCARECROW
5b3h_A6e-3520756826378Protein SCARECROW
5b3h_D6e-3520756826378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037758
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488851.11e-170DELLA protein RGL1-like
TrEMBLA0A2H5N6801e-167A0A2H5N680_CITUN; Uncharacterized protein
TrEMBLV4RFL41e-167V4RFL4_9ROSI; Uncharacterized protein
STRINGLus100377580.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-53RGA-like 2