PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10037757

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 270aa MW: 30543.9 Da PI: 8.6729

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10037757	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	104.7	1.3e-32	106	257	3	149
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilkfsh 95 e Ll++Ae v +++le+a+ lL++ +l +sp++dp+qRl+ yf +AL++r+ + ++ +++ +++ + e ++ ++ f + P+ +s+ Lus10037757 106 EFLLTAAEKVGDEQLEKARDLLTQYCDLqSSPTRDPVQRLVYYFSRALRERIDSRRGKIKQTVLLQKSGLVQ--EITMPTREyfleFRQKVPFGPVSQ 201 789*******************9999899999****************888999888777776333..222222223457******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa..sRpegppslRiTgvgs 149 +ta qaI+++v++++r+Hi+Df+i++ QW+ ++qaL +R+++ +l+iT++g Lus10037757 202 FTAIQAIVDSVAKATRIHIVDFNIKHREQWIIFMQALVeeNRKNPVEHLKITAIGT 257 *********************************9444557777*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.679	78	269	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-30	106	257	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MADHVFSSGI KDHHGQMIHS RQVFLDELLA EMRKNSNPAK PTNYIPLEAA DSAGLSTEEL 60 LRIAGAKFIQ SSSSRSGDSE TMSPFENFFS AGGLSEEQLK NVELAEFLLT AAEKVGDEQL 120 EKARDLLTQY CDLQSSPTRD PVQRLVYYFS RALRERIDSR RGKIKQTVLL QKSGLVQEIT 180 MPTREYFLEF RQKVPFGPVS QFTAIQAIVD SVAKATRIHI VDFNIKHREQ WIIFMQALVE 240 ENRKNPVEHL KITAIGTMGR TCWKRLVKG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10037757

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10037757	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	1e-12	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10037757