PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037754
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 320aa    MW: 36108.6 Da    PI: 7.8031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037754genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS228.14e-70630088374
         GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp.......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                   Pil++ hl+a qaIle v +++++H+iD+ i+ G QW+aL+q L  sR+       ++   lRiT+vg  +++++ +++etg+rLa+fA ++++pf+
  Lus10037754   6 MPILQIPHLAAVQAILENVTSSNKIHVIDLKIGSGQQWVALMQGLLtSRSdedraggASVDLLRITAVGI-AAFDRSQVQETGDRLASFAGSINIPFR 102
                  6******************************************9764888766653223569*******9.678************************ PP

         GRAS 178 fnvlvak...rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                  f+v+v++   + +d++++++ ++p +E+++V +    ++l  ++  +e+    v+ ++k+++P+++vvve ea++ns++F  rf+e++ +y ++f++l
  Lus10037754 103 FEVVVVTdekDASDFRPDRFGLEPkEESVVVYSEGVFKTLIGQPRRIEQ----VMLTLKRMNPRIMVVVEVEANLNSPNFGGRFVETMFHYGTIFEAL 196
                  ***954323488999*********7788888888888888877777777....********************************************* PP

         GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                  e+++ r++  r+ +E  llg +++n++a eg+er  r  + + Wr+ + ++G+ +v+ s  +  qak  l+++  ++ y+ve + +sl+lg k+ p+ 
  Lus10037754 197 ESTMERDDAFRAGIESGLLGHQVSNILASEGEERHVRGVKIGVWRKFFARFGMVEVEPSAMTLHQAKWFLHRFVkNQSYTVEMDGKSLILGFKRMPIR 294
                  *************************************************************************98899******************** PP

         GRAS 369 svSaWr 374
                   vS W+
  Lus10037754 295 CVSTWK 300
                  *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.8621279IPR005202Transcription factor GRAS
PfamPF035141.4E-676300IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MQRGQMPILQ IPHLAAVQAI LENVTSSNKI HVIDLKIGSG QQWVALMQGL LTSRSDEDRA  60
GGASVDLLRI TAVGIAAFDR SQVQETGDRL ASFAGSINIP FRFEVVVVTD EKDASDFRPD  120
RFGLEPKEES VVVYSEGVFK TLIGQPRRIE QVMLTLKRMN PRIMVVVEVE ANLNSPNFGG  180
RFVETMFHYG TIFEALESTM ERDDAFRAGI ESGLLGHQVS NILASEGEER HVRGVKIGVW  240
RKFFARFGMV EVEPSAMTLH QAKWFLHRFV KNQSYTVEMD GKSLILGFKR MPIRCVSTWK  300
FVRIGRLVRD NEELRVEFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-26630087375GRAS family transcription factor containing protein, expressed
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100377540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-45RGA-like 1