PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037752 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 262aa MW: 29146.9 Da PI: 4.3686 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 24.5 | 3.1e-08 | 113 | 169 | 4 | 60 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 Ll+ A+ v++g + +a +lL l++++++p++R+++yf +AL+a++a+++ ++ Lus10037752 113 YLLSSANNVAKGRFDQALSLLGLCDGLSTSQANPVERVVHYFSQALRAKIAEETGTV 169 6999***********************************************955544 PP | |||||||
2 | GRAS | 34.3 | 3.3e-11 | 202 | 260 | 242 | 299 |
GRAS 242 veqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 + ea++ ns+ F++rf+e l +y alfd l++ + +++er++vE +l++ i+n+v Lus10037752 202 AKVEASRvNSPCFAARFVEMLFHYGALFDGLDTCTGDNEQERTVVESTYLSKLIMNAVV 260 55677777************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.1E-5 | 113 | 169 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-8 | 202 | 260 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGYHLHHDDR FFLDSDMHTF DHVEVDDDDQ WSLQHGRSQE LDGNTDDDDD EDSDQWPVLD 60 VSSTVNPHLE TEESSTLSIE DVIRHAGMRM IHMSSNNHGL SDRDVRNVAL TGYLLSSANN 120 VAKGRFDQAL SLLGLCDGLS TSQANPVERV VHYFSQALRA KIAEETGTVQ NLIISGDYKI 180 FRPDDTSVHS SQISQHIAAT QAKVEASRVN SPCFAARFVE MLFHYGALFD GLDTCTGDNE 240 QERTVVESTY LSKLIMNAVV E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037752 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10037752 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 9e-07 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10037752 |