PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037572
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 306aa    MW: 33303.9 Da    PI: 6.866
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037572genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17202236135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Lus10037572 202 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 236
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.6E-781287IPR016679Transcription factor, GATA, plant
SMARTSM004012.4E-17196246IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.47E-15200259No hitNo description
PROSITE profilePS5011411.319200232IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14200234IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.61E-14201252No hitNo description
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15202236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQAPEFFASS YYGGDQSHFA VDDLLNFPNE GDAIMSDGFF DTIAKTCAGD SPAFTPNNSS  60
NSSSSTSAAA SYRNAADSHF STELCVPYDD MAELEWLSNF VDESYSIDPT LETNLHMLQI  120
GSKPTAPVST DLEPSVHNAN GAMFQNETPL PGKARSKRSR AAPGNWTARL LHLTPSTKGS  180
DINPNPTPHL SQEGVGSGVR RCLHCATEKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY  240
RPAASPTFVP AKHSNSHRKV VELRRQREAA AHQEQLISQS SIFGASNGGD EFLVHHHHHH  300
FRHMI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037572
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643253.11e-120GATA transcription factor 9-like
TrEMBLA0A067KXE61e-117A0A067KXE6_JATCU; GATA transcription factor
STRINGLus100375720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-70GATA transcription factor 9