PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037398
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 289aa    MW: 32669.3 Da    PI: 6.9692
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037398genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.9e-20207241135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg+++Tp+WR+gp g+ktLCnaCG++yr+ +l
  Lus10037398 207 CSHCGVSETPQWREGPLGPKTLCNACGVRYRSGRL 241
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-15199263No hitNo description
SMARTSM004011.7E-18201255IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.426201237IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-15205238IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.22E-16206255No hitNo description
PfamPF003206.9E-18207241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNDSWFDNNF SEFTDELFES LNYLDLPLED VEPAGEEEDW RTKFQDVEPP SAFFLPSFSS  60
DICSPSCKDL EKESFQFKQC SPIPEEASYG RSISIQCDSS ERNHSQHFRT SSPISVLESS  120
SSSCPAENPR IAKRPRSKGL RSRRCTYELF NPSSFVSRML PPLGELRSEY DSYLDEKMSS  180
GLVENNRRRK RKKKNLMMRS SGETRECSHC GVSETPQWRE GPLGPKTLCN ACGVRYRSGR  240
LLPEYRPAAS PTFSPSLHSN SHRKVLEMRK KSFAGDNGQN GSTPEANA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185192NRRRKRKK
2187193RRKRKKK
3188192RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8859081e-113HQ885908.1 Linum usitatissimum clone Contig1835 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455697.17e-75GATA transcription factor 11 isoform X2
TrEMBLA0A3N7EUH02e-73A0A3N7EUH0_POPTR; Uncharacterized protein
STRINGLus100373980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-36GATA transcription factor 11