PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037198 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 99aa MW: 10997.3 Da PI: 10.0199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.9 | 7.7e-08 | 22 | 65 | 14 | 54 |
HHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 d+i + +++L++l+P+a + + K s + +L+++++YIk+L Lus10037198 22 DQIIDLISKLQRLIPEARsssRRSRDKGSASKVLQETCNYIKDL 65 578899**********5559888888999*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.125 | 8 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-5 | 22 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-7 | 22 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-7 | 24 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MSSRRSSSSR SRQSSRSIIS DDQIIDLISK LQRLIPEARS SSRRSRDKGS ASKVLQETCN 60 YIKDLHREVD DLSDRLSELL ATTDSDSAQA AIIRSLLM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that regulates light-mediated responses in day light conditions by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. Forms non-functional heterodimers with HFR1, causing liberation and activation of PIF4 from the transcriptionally inactive HFR1-PIF4 complex. {ECO:0000269|PubMed:16786307, ECO:0000269|PubMed:23224238}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037198 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at midday. {ECO:0000269|PubMed:16786307}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429660.1 | 5e-38 | PREDICTED: transcription factor PRE6-like | ||||
Refseq | XP_020239912.1 | 6e-38 | transcription factor PRE6 | ||||
Swissprot | Q8GW32 | 1e-33 | PRE6_ARATH; Transcription factor PRE6 | ||||
TrEMBL | A0A0L9TLK3 | 1e-36 | A0A0L9TLK3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R1V6 | 1e-36 | A0A0S3R1V6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A151RGX8 | 1e-36 | A0A151RGX8_CAJCA; Transcription factor bHLH135 family | ||||
STRING | Lus10037198 | 1e-58 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF567 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 4e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10037198 |
Publications ? help Back to Top | |||
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