PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036709
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 290aa    MW: 33275.9 Da    PI: 4.6609
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036709genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.4e-1867123157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  r+k++++t++q++ Le+ F++++++  e++ +LA+++gL+ rqV +WFqNrRa+ k+
  Lus10036709  67 RCKKRRLTASQVQFLERSFKNENKLEPERKIQLANEIGLQPRQVAIWFQNRRARFKN 123
                  678889************************************************995 PP
2HD-ZIP_I/II124.83.9e-4069160293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl++ qv++LE+sF++e+kLeperK +la+e+glqprqva+WFqnrRAR+k+kqlEkd+++Lk+ +d+lk++ ++L +e+e+Lr+++++
  Lus10036709  69 KKRRLTASQVQFLERSFKNENKLEPERKIQLANEIGLQPRQVAIWFQNRRARFKNKQLEKDFDSLKSDFDRLKSDYSSLLHEKESLRNQVNS 160
                  9***************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1958126IPR009057Homeodomain-like
PROSITE profilePS5007117.62164124IPR001356Homeobox domain
PfamPF000469.8E-1667122IPR001356Homeobox domain
SMARTSM003892.2E-1767128IPR001356Homeobox domain
CDDcd000862.33E-1669125No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1971131IPR009057Homeodomain-like
PRINTSPR000312.9E-595104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5104120IPR000047Helix-turn-helix motif
PfamPF021832.2E-16124165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASETLSGGS GSGFDHLPYW IPSISTSLYG AAARQMVDYE NDGTFFNPMV KEELCCDEDF  60
ENGSSPRCKK RRLTASQVQF LERSFKNENK LEPERKIQLA NEIGLQPRQV AIWFQNRRAR  120
FKNKQLEKDF DSLKSDFDRL KSDYSSLLHE KESLRNQVNS LKEKLTAREI KARETTSFRV  180
PAAIVPPVSK SDLVDSDSPH SVLIERSSES HYVFEENQSD YFSQDEADDQ NSLIMMNTNR  240
FMMAAAELTS FERFSSNEHD NNNNSNNALS EFPVEEDQPY LVLDLMNWM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091954.14e-68homeobox-leucine zipper protein ATHB-54
TrEMBLA0A067JML69e-67A0A067JML6_JATCU; Uncharacterized protein
STRINGLus100367090.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-40homeobox 1