PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10036624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 214aa MW: 24560.5 Da PI: 9.7295 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92 | 4.6e-29 | 140 | 198 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk++++pr+YY+C s gC+vkk+ver++ed ++v++tYeg Hnh+ Lus10036624 140 MDDGFKWRKYGKKSVKNTPYPRNYYKCPSVGCNVKKRVERDREDSSFVITTYEGVHNHH 198 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-31 | 127 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 132 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.195 | 135 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-32 | 140 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-23 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MNLIRAPPPP PPPPCQNPNN SNPFRQFADP LDFQFSDFLL PPDPLFNHDH DSRHEEIDNI 60 FASTGKYNNS YSFPQSNITA TSPLQVGSDG SCNSSSWTMI GRNDVKGSGR MRKVEEQKQR 120 KGEVVNRRVA FRTKSEVDVM DDGFKWRKYG KKSVKNTPYP RNYYKCPSVG CNVKKRVERD 180 REDSSFVITT YEGVHNHHRH QISPFKVQME LLR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-25 | 130 | 197 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-25 | 130 | 197 | 7 | 74 | Probable WRKY transcription factor 4 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10036624 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10036624 | 1e-159 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10036624 |