PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 198aa MW: 21337.1 Da PI: 9.6607 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 134.9 | 9.7e-42 | 94 | 158 | 106 | 170 |
YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +p++ppv+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Lus10036496 94 EDTTPKPPPVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 158 667899*********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-39 | 78 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.97E-8 | 101 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 107 | 150 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MRGLLLPAAA TSAAAATSQL HLGHPFFTPH NLLEDMRSTS APSLMMNNNG GGNNNHQHHQ 60 HQQMGLNDLV SSPFMPIRGG GSGGGGGTMG LGFEDTTPKP PPVNRPPEKR QRVPSAYNRF 120 IKDEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLMP DNQPGKKPNL LQQEAEDQMG 180 LIKDGFFPPA NLGVTPY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036496 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344718.1 | 3e-69 | protein YABBY 3 | ||||
Refseq | XP_027335074.1 | 4e-69 | axial regulator YABBY 1 isoform X1 | ||||
Refseq | XP_028238074.1 | 3e-69 | axial regulator YABBY 1-like | ||||
Swissprot | O22152 | 2e-57 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A0B2SSL5 | 7e-68 | A0A0B2SSL5_GLYSO; Axial regulator YABBY 1 | ||||
TrEMBL | I1J7S5 | 7e-68 | I1J7S5_SOYBN; Uncharacterized protein | ||||
STRING | Lus10036496 | 1e-142 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-49 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10036496 |