PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10036459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 535aa MW: 59170.8 Da PI: 6.3322 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 29.2 | 1.1e-09 | 88 | 142 | 1 | 55 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lve Ll++Ae v ++ + la +lL l+s++gdp+qR++ yf eAL++r+ r Lus10036459 88 LVEYLLAAAEKVGNQRHDLAANLLDLCDCLSSQTGDPVQRVVYYFSEALRTRIDR 142 5789*************************************************88 PP | |||||||
2 | GRAS | 255 | 2.7e-78 | 225 | 517 | 81 | 374 |
GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 l+ ++e P+++++hl a q +le + +++r+H+iD +i +GlQW a++qaLasRp + + l+iT++g ++sk++++etg+rL++fA++++vpf+ Lus10036459 225 LQSLHENVPFYQVAHLSAIQILLENLGNSKRIHVIDVQIRYGLQWTAMMQALASRPdRTTELLKITALGT--NDSKDQIQETGRRLTSFARSINVPFD 320 46699***************************************************566679********..56************************ PP GRAS 178 fnvlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 f++++a +l dl++e+++++p+EalaV l + + + s+e ++kl+++ +P++vvv e ea+hns +F++rf+eal ysa+fd+l+ Lus10036459 321 FKIVMAGspDLLDLQPEMFDIDPREALAVYTEGYLSNRIATPDSMEA----LMKLLRNFNPRIVVVLEVEANHNSRTFAHRFVEALFSYSAVFDCLDC 414 ***96654689999**********************99988888888....*********************************************99 PP GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369 + ++ e r++vE + l+++i+nvva+eg+er r+ + Wr l ++ + + +ls + qakl+l++++ + ++ + +sl+lgWkd p++s Lus10036459 415 CMEGQDfESRMVVESVGLREAISNVVAKEGEERGFRNVRIDVWRTLLARFSLVESKLSAVVLYQAKLVLKRFPsRRFCKLYVDGKSLILGWKDTPMIS 512 9988888******************************************************************55557899***************** PP GRAS 370 vSaWr 374 +S+W+ Lus10036459 513 ISSWK 517 ****8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.177 | 62 | 496 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-7 | 88 | 142 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-76 | 225 | 517 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 535 aa Download sequence Send to blast |
MAAANSVNTG SESTAAESSN STKPSELPAG DEEVLSTNEI LRVAARRIIS MSTSSSTHTI 60 DLPSLMNNPF DLSPSSGISC QDAIRVELVE YLLAAAEKVG NQRHDLAANL LDLCDCLSSQ 120 TGDPVQRVVY YFSEALRTRI DRELGKGRVT GVEEAPGMIL LGNVSGIVCA ATGLPPILLL 180 QADGRRRSPN GPAARLNLAG DGFGICPARC RYFLNEDISI PSYLLQSLHE NVPFYQVAHL 240 SAIQILLENL GNSKRIHVID VQIRYGLQWT AMMQALASRP DRTTELLKIT ALGTNDSKDQ 300 IQETGRRLTS FARSINVPFD FKIVMAGSPD LLDLQPEMFD IDPREALAVY TEGYLSNRIA 360 TPDSMEALMK LLRNFNPRIV VVLEVEANHN SRTFAHRFVE ALFSYSAVFD CLDCCMEGQD 420 FESRMVVESV GLREAISNVV AKEGEERGFR NVRIDVWRTL LARFSLVESK LSAVVLYQAK 480 LVLKRFPSRR FCKLYVDGKS LILGWKDTPM ISISSWKFAR LRKHKEDEAL GLSM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-37 | 233 | 516 | 107 | 378 | Protein SCARECROW |
5b3h_A | 5e-37 | 233 | 516 | 106 | 377 | Protein SCARECROW |
5b3h_D | 5e-37 | 233 | 516 | 106 | 377 | Protein SCARECROW |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10036459 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10036459 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 7e-48 | RGA-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10036459 |