PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036117

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 350aa MW: 39125.7 Da PI: 5.1588

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036117	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.9	1.4e-51	20	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 ppGfrFhP+deel+v+yL++kv++++l++ +i+evd+yk++Pw+Lp k+ +e+ewyfFs+rd+ky++g r+nra+ sg+Wkatg+dk++ls+ +++ Lus10036117 20 PPGFRFHPSDEELIVFYLQNKVTSRPLPA-AIIAEVDLYKYNPWELPDKALFGEEEWYFFSPRDRKYPNGARPNRAAGSGFWKATGTDKPILSTsGSK 116 9**************************.88***********7777899**********************************997788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+gr pkg+ktdW+m+eyrl Lus10036117 117 SIGVKKALVFYSGRPPKGVKTDWIMNEYRL 146 8*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-63	15	173	IPR003441	NAC domain
PROSITE profile	PS51005	60.071	19	173	IPR003441	NAC domain
Pfam	PF02365	9.6E-26	20	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MERSGGEANN NCNNKSFQFP PGFRFHPSDE ELIVFYLQNK VTSRPLPAAI IAEVDLYKYN 60 PWELPDKALF GEEEWYFFSP RDRKYPNGAR PNRAAGSGFW KATGTDKPIL STSGSKSIGV 120 KKALVFYSGR PPKGVKTDWI MNEYRLLDPT IKPSRIKGSM RLDDWVLCRV RQKGPMTSKN 180 PYDVNGSPVK ETVSYLPVKE EAATPYMMNC DNDMIRDCLN QDCRVLASLL VGQTLPTIDN 240 NNRKSNNDNN GTTVNNNSPP SITVSPFENY VNPLKRKSGD EDNDSFLPES KKSNSRDEQD 300 LLGCGGGGGE NNYNGQNQSQ DGFYNEDAMD PMIGLLELNE FGFSGKYLE*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MERSGGEANN NCNNKSFQFP PGFRFHPSDE ELIVFYLQNK VTSRPLPAAI IAEVDLYKYN  60
PWELPDKALF GEEEWYFFSP RDRKYPNGAR PNRAAGSGFW KATGTDKPIL STSGSKSIGV  120
KKALVFYSGR PPKGVKTDWI MNEYRLLDPT IKPSRIKGSM RLDDWVLCRV RQKGPMTSKN  180
PYDVNGSPVK ETVSYLPVKE EAATPYMMNC DNDMIRDCLN QDCRVLASLL VGQTLPTIDN  240
NNRKSNNDNN GTTVNNNSPP SITVSPFENY VNPLKRKSGD EDNDSFLPES KKSNSRDEQD  300
LLGCGGGGGE NNYNGQNQSQ DGFYNEDAMD PMIGLLELNE FGFSGKYLE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-70	17	173	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-70	17	173	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-70	17	173	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-70	17	173	15	165	NO APICAL MERISTEM PROTEIN
4dul_A	7e-70	17	173	15	165	NAC domain-containing protein 19
4dul_B	7e-70	17	173	15	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036117

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021683845.1	1e-141	NAC domain-containing protein 2-like
Swissprot	K4BNG7	1e-81	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	B9SK58	1e-134	B9SK58_RICCO; NAC domain-containing protein, putative
STRING	Lus10036117	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-79	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Lus10036117

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]