PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035873
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 377aa    MW: 42106.6 Da    PI: 6.88
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035873genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-1184127245
                  XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                  +++k++rr+++NReAAr+sR+RKka++++Le    +L +  ++L
  Lus10035873  84 SSDKVQRRLAQNREAARKSRLRKKAYVKQLESSRLKLVQLEQEL 127
                  589****************************8766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-781131No hitNo description
SMARTSM003382.8E-783150IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9985129IPR004827Basic-leucine zipper domain
PfamPF001701.6E-885128IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-887129No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
PfamPF141442.4E-29177252IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNSSSTHFVT SGGMDMYDHV QQLSMWGETF RSNGSPNALT SILIPNASQS LIITADMKLD  60
NQSEDTSNGT PGPLYKYDQE VTKSSDKVQR RLAQNREAAR KSRLRKKAYV KQLESSRLKL  120
VQLEQELDKA RQQACFYGSY VGSGIEGNHV GSNGAINSGI ATFEMEYGHW LEEQQKHVCE  180
LRAALNSDIG DGDIRILVEA SLNHYYELFR MKGAAAKADV LYVMSGLWKS PAERFFLWIG  240
GFRPSELIKV LRPQIEPLAE PQLQNICNLG QLCQQAEDAL SQGMERLQQT LAQSVADSQL  300
GEASYSPQID TAMEKLDSLI RFVRQADHLR KVALVQVSQI LTPRQAARGL LALGEYFDRL  360
KSLSRVWETN SPREQA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075186.10.0transcription factor TGA1
RefseqXP_020535956.10.0transcription factor TGA1
RefseqXP_020535957.10.0transcription factor TGA1
SwissprotQ392371e-160TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A067KGJ60.0A0A067KGJ6_JATCU; Uncharacterized protein
STRINGLus100358730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-162bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]