PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035637
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 601aa    MW: 67370.2 Da    PI: 6.2906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035637genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-1341132898
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ l+++ l lp kf++++ ++   s t +l  ++g +W+v +        +k++++++++GW eF + n + eg f+vFk+ g s f   v +f+
  Lus10035637  41 PYILEEKKLKLPLKFVRRYRSE--VSSTAKLALPNGLEWNVGVEKnmnedGNKKEEIWFSDGWGEFMEHNSISEGFFLVFKYRGCSVF--DVEIFD 132
                  67788899***********755..3459***************7767775555566*************************9775666..777776 PP
2B343.74.8e-142323181588
                  -EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  15 rlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +p +fa+eh          +++++ ++l+  ++ ++W+v++    r ksg+   + +++GW++F ++n+L egD+++F+l++ +
  Lus10035637 232 KPAIPISFAREHilksadtTTTTTTTTSVVLRMsSEKKQWSVEVGNdrRVKSGSyycVSFRQGWRRFKEDNNLGEGDVCLFQLISPE 318
                  457*********8887766333345555666652455*******66556667776666688*********************98754 PP
3B3474.7e-15487592198
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS......-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg......rsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                  f+ vl++  v  ++r v+p ++a++h      k++++t+ l+   g      ++W+v++   ++s+     ++l++GW++F ++n+L +gD+++++l+
  Lus10035637 487 FILVLSSDQVEGKSRPVIPISYARDHipdR-GKTRTTTVALQM--GgfgnsvKQWSVQVA--RGSSVsfcsVTLAQGWRQFNEDNNLGVGDVCLLHLV 579
                  6778888899999*************9952.445655666655..2246899*******4..333333666**************************9 PP

                  SSSEE..EEEEE- CS
           B3  86 grsefelvvkvfr 98 
                  + ++  ++v+vf 
  Lus10035637 580 SPEDLVFNVSVFP 592
                  9899988888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1729135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1731136IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-1334132No hitNo description
PROSITE profilePS5086312.02634134IPR003340B3 DNA binding domain
SMARTSM010191.9E-1035134IPR003340B3 DNA binding domain
PfamPF023623.8E-1041131IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-13211317IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-14212318IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-12216315No hitNo description
SMARTSM010194.4E-8218328IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983218328IPR003340B3 DNA binding domain
PfamPF023626.5E-12234319IPR003340B3 DNA binding domain
CDDcd100171.10E-8310406No hitNo description
SuperFamilySSF1019363.34E-9324410IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-9325409IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.752371408IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-15480592IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14482591IPR015300DNA-binding pseudobarrel domain
CDDcd100176.91E-14485592No hitNo description
SMARTSM010198.0E-5487594IPR003340B3 DNA binding domain
PfamPF023624.4E-12487592IPR003340B3 DNA binding domain
PROSITE profilePS5086312.097487594IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MASPHHHAPK NHSRTWPFSS SSSSSSIEKK PHSSFFRIIL PYILEEKKLK LPLKFVRRYR  60
SEVSSTAKLA LPNGLEWNVG VEKNMNEDGN KKEEIWFSDG WGEFMEHNSI SEGFFLVFKY  120
RGCSVFDVEI FDLTTCSISY PPPPPQESGF PNIVVISDDE EDDKFGGGDE MVNTLESLKA  180
SGIVTSYFFY MRISKMYSKC KKGIEDAILV SNPAYPSFML VLNSDKSGDR YKPAIPISFA  240
REHILKSADT TTTTTTTTSV VLRMSSEKKQ WSVEVGNDRR VKSGSYYCVS FRQGWRRFKE  300
DNNLGEGDVC LFQLISPEDL VMDKLPLNFV RRYGSEIASV AKLYLPNGDA CKVGVEKKRK  360
EDGNKGDEIW LSDGWGECME HHSISKGFFL VFKYRGCSVF DVEIFDLTTC SISYPPPYHV  420
VVISDDGDDE KDENVGGDEM EKTLEPLKES GIVTNQWLNG RIRRMYKECK KGIEDAVLAS  480
SPAHPSFILV LSSDQVEGKS RPVIPISYAR DHIPDRGKTR TTTVALQMGG FGNSVKQWSV  540
QVARGSSVSF CSVTLAQGWR QFNEDNNLGV GDVCLLHLVS PEDLVFNVSV FPAAQSTNHI  600
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035637
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100356370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-16B3 family protein