PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035416
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 448aa    MW: 50490.8 Da    PI: 8.2032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035416genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.77.8e-2271160198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k l++s+v++  ++ lp +f++++    +e++t+tle+e+g+++++k+   +++ +  l++GW++F+ a++L egD++vF+l+g+ +f  +v v+r
  Lus10035416  71 FLKSLVRSHVGSCFWMGLPGPFCRANLP--QEDTTVTLENEDGKEFNIKY--IGYKTG--LSAGWRQFCVAHKLLEGDVLVFQLVGNCRF--KVYVIR 160
                  89*********************99953..3678****************..666655..9*************************9999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-2164161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-2465161IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-2769160No hitNo description
PfamPF023621.6E-1971160IPR003340B3 DNA binding domain
PROSITE profilePS5086313.67671162IPR003340B3 DNA binding domain
SMARTSM010192.5E-2371162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MQRVRVRSFS SLHTCWMLKV PRPIVSLARK IGCEQHEARM DGLSTPKEVK SAALIRAEEI  60
QSNLEPAFPS FLKSLVRSHV GSCFWMGLPG PFCRANLPQE DTTVTLENED GKEFNIKYIG  120
YKTGLSAGWR QFCVAHKLLE GDVLVFQLVG NCRFKVYVIR AHDLAEVDGA LGLLNLDAHI  180
KPNDAELMEQ KGGVNAVMAI VPSKSAKRKR CRPQSSFIGK KKRKTNRPRS SFQTTGQTTA  240
EQSENDSEEV GSEVLEGFKL SFPGIQFRDI QSFEDFSIVI EGLVIDSELS EEARNKYYKL  300
CCSQNAFLHE DLIKGLNFKL IAGVISETVH IANAIRECSL STSQDEFATW DKTLRASELF  360
GMNVGFLRER LRQLVGLAFD SEDATKTRRY MEARSERLEN EVEIRNLEAK LVELKAAYER  420
SGCDITSLKS KAERYELKFQ KQVVAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207223RKRCRPQSSFIGKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035416
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577525.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A2C9URH30.0A0A2C9URH3_MANES; Uncharacterized protein
STRINGLus100354160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-35B3 family protein