PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26264.1 Da PI: 6.2996 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.5 | 5.4e-19 | 23 | 160 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlsk 95 G+ F+Pt++ l ++L +k+++ + ++ e+ ik++d+y++ePwd+ ++++++e+ ++yf++k ++k +++k r a +g W+ +++v ++ Lus10035400 23 HSGIVFRPTEKHLF-QFLIRKIRRGDaVDDEDPIKDLDVYSMEPWDIWNRFSEDERcDLYFYTKLKRKPSNNK-IDRgvAGGKGLWQGESAKRDVQVN 118 5799*********9.889999888775666678**************978777666688*****999877655.555355669******999999998 PP NAM 96 ....kgel.........vglkktLvfykgrapkgektdWvmheyr 127 + + + + + + +g++ + e +W+m eyr Lus10035400 119 ytrkQ--AsrvlsrcilNIVVREFRYSNGEKAE-EDGRWIMTEYR 160 65432..25655555544444556666666666.7899******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-16 | 14 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.731 | 22 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-9 | 25 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDDEAHAALQ ERRRAFFASL NLHSGIVFRP TEKHLFQFLI RKIRRGDAVD DEDPIKDLDV 60 YSMEPWDIWN RFSEDERCDL YFYTKLKRKP SNNKIDRGVA GGKGLWQGES AKRDVQVNYT 120 RKQASRVLSR CILNIVVREF RYSNGEKAEE DGRWIMTEYR ENPAGAVDWV IFRLRRDGKA 180 VASSPSIGSP ATSESGGSAC CTDDDDDPKR AKISDADFQG GGGASSSGNV DNS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10035400 | 1e-172 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 5e-12 | NAC domain containing protein 76 |
Link Out ? help Back to Top | |
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Phytozome | Lus10035400 |