PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035256
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 316aa    MW: 35120.1 Da    PI: 6.8885
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035256genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.23.1e-14233257226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tG C+yG+ C+FaHg
  Lus10035256 233 KTELCNKWQATGSCPYGNHCQFAHG 257
                  9***********************9 PP
2zf-CCCH17.95.6e-06270294125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  ykte Cr  +++  C+yG rC+F H
  Lus10035256 270 YKTEVCRMVLAGDVCPYGHRCHFRH 294
                  9**********55**********77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-10230263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-17230264IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906232259IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-11233257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-11265297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8265300IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-4269296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784269297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEKENYSSAT NSDLIADLSP NYFNTSDDLD YASFFRPQSS DFLSVSPSSY LSNSVGPHQD  60
MVNRHALCLT RLRQAAREVE SLRQENDVLR SINHELNSNL NVLVRSSAFQ NHFLSSRYDS  120
SPPLDLINSF RDCNLGGGEE LSDDQSPTSV IEVQSAGDTD RISLPKSISV RSNAYLKIGQ  180
HAAAGASTKT RSVTRPCYTK PLDGSAKVYI RGNGAKKEEE ALELEVYSQG VLKTELCNKW  240
QATGSCPYGN HCQFAHGVEE LRPVIRHPRY KTEVCRMVLA GDVCPYGHRC HFRHAITDQD  300
KVTEPVNSKL TKLDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-21233294566Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643815.11e-117zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F54e-80C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2C9UKN81e-114A0A2C9UKN8_MANES; Uncharacterized protein
STRINGLus100352560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-81C3H family protein