PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035174
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 259aa    MW: 28602.2 Da    PI: 8.2242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035174genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM929.9e-29161401128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+++d  +     Lp  + + ++++yfF+k d ++  g++k    k gyWk+tgk ++++++   
  Lus10035174  16 LPIGYRFRPTDEELIVHYLRRKVFGLPLPA-SVIPDLDHPS---TALP--AGNPSEKMYFFCKGDDHN--GSNKIVEEKGGYWKHTGKARHIFAAsss 105
                  699***************************.89***98444...4688..34456799*****99975..5566666789*************99887 PP

          NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +++lvg++++Lvf   +g+++k++  +Wvmhe+ l
  Lus10035174 106 NNQLVGIRRSLVFQahNGKRKKSQTYKWVMHEFCL 140
                  8888*********8667899999999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3413168IPR003441NAC domain
PROSITE profilePS5100535.3516168IPR003441NAC domain
PfamPF023657.5E-2217139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEKQSMNGGG GGGIKLPIGY RFRPTDEELI VHYLRRKVFG LPLPASVIPD LDHPSTALPA  60
GNPSEKMYFF CKGDDHNGSN KIVEEKGGYW KHTGKARHIF AASSSNNQLV GIRRSLVFQA  120
HNGKRKKSQT YKWVMHEFCL VGFVTTPFTN QISMVKVGEW VLCSVFQKKR RATTNTNKKK  180
LITRCSTSPN PVAEGSMDFR VDELSDAGPS CDDHEEEEEE EEGKVGSLSG ITELSSTKSS  240
SSRGLLSVEE EDITSSQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-201416913169Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100351740.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.16e-30NAC domain containing protein 84