PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035006
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 380aa    MW: 42497.4 Da    PI: 6.4302
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-08127147526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+ f++ G Ck Gd+C FaHg
  Lus10035006 127 ACPEFRK-GSCKKGDSCEFAHG 147
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-5122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253123149IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6127147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5127149IPR000571Zinc finger, CCCH-type
SMARTSM003569.3157180IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.038157181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MMLGEQHRLN HSVHVPPWDD QSHDNLFSPG NGDSSDYNSF YIPEALSALQ RFLPSNDSDF  60
DQVFDIPGLD HDSPIDAYSC DQFRMYEFKV RRCARGRSHD WTECPYAHPG EKARRRDPRK  120
FHYSGTACPE FRKGSCKKGD SCEFAHGVFE CWLHPARYRT QPCKDGTNCK RRVCFFAHTP  180
EQLRVLPQSP RSVNSADSYD GSPLRQAIEA SCVRNLPFLA SSNSPGSITP PEVDSPPMSS  240
ILSRSLGSNS VNEMVASLRN LQIGKMPSLP WSWNVQVGGG CSGGGSVYGS PRAGSILRPE  300
FYSVPTTPTR TPSWLRYSDF WDKVCEEEPA MERVESGRDI RARMFERLSK ENNMLELVDP  360
GMGPTSGGPD VDWVSDLVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076821.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821991e-130C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A067KPP40.0A0A067KPP4_JATCU; Uncharacterized protein
STRINGLus100350060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-125C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]