PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034624
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 318aa    MW: 35294.4 Da    PI: 7.5661
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034624genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.23e-14235259226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tG C+yG+ C+FaHg
  Lus10034624 235 KTELCNKWQATGACPYGNHCQFAHG 259
                  9***********************9 PP
2zf-CCCH17.95.7e-06272296125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  ykte Cr  +++  C+yG rC+F H
  Lus10034624 272 YKTEVCRMVLAGDVCPYGHRCHFRH 296
                  9**********55**********77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-10232265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-17232266IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699234261IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-11235259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-8267302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-12267300IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-4271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784271299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKENYSSAT HSDLAADLSR NYFNTSDDLD YASLFRPQSS DFLSVSPTSY LSKSVGPHQD  60
MVNRHALCLT RLRQAAREVE SLRQENDVLR SINHELNSNL NVLVRSSAFQ NHFLSSRYDS  120
SPPLDLLNAF RDCNLGGGGG EELSDDQSPT SVIEVQGAGD TDRILLPKSI SVRSNAYLKI  180
GQHAAAGAST KTRSVTRPRD TKPLDGSAKV YIRGNGAKKE EEALELEVYS QGVLKTELCN  240
KWQATGACPY GNHCQFAHGV EELRPVIRHP RYKTEVCRMV LAGDVCPYGH RCHFRHAITE  300
QDKVTERVNS KPTKLDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-21235300570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034624
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634804.11e-120zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F56e-81C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2C9UKN81e-118A0A2C9UKN8_MANES; Uncharacterized protein
STRINGLus100346240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-80C3H family protein