PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034280
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 340aa    MW: 37875.7 Da    PI: 6.6957
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034280genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31172227156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gL++++vkSHLQkYRl+
  Lus10034280 172 KQRRCWSPELHRRFLHALQQLGGSHAATPKQIRELMKVDGLSNDEVKSHLQKYRLH 227
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-28169230IPR009057Homeodomain-like
PROSITE profilePS5129413.931169229IPR017930Myb domain
SuperFamilySSF466897.89E-18170230IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-26172227IPR006447Myb domain, plants
PfamPF002492.2E-7174225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016036Biological Processcellular response to phosphate starvation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0080022Biological Processprimary root development
GO:1901699Biological Processcellular response to nitrogen compound
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MIVMDFPDQR KRCHQYVDAL EEERRKIKVF QRELPLCFEL VTQAIDACRR DLSGTTTEYN  60
MPGQSECSEH TSSGGPVLEE FIPIKPHNDD DQDENQDNNN SAHHEEDDND YHFQDERSLK  120
RTRDDDNKDE EDINKEKMND HKKKSEWLRS VQLWNQSPDP PSVREVLGAQ RKQRRCWSPE  180
LHRRFLHALQ QLGGSHAATP KQIRELMKVD GLSNDEVKSH LQKYRLHTRR PSHAVQNNSN  240
QAGPHFVVVG GIWVPPPAEY AAAAAAAAAG ETSAIMAHGG MYAPIATAPP PPATTKKQQT  300
RSSERRGGSS SSHSEGGGAH SCSPTTSSST HTATSPPAI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00140DAPTransfer from AT1G13300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034280
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616746.11e-104transcription factor HHO3-like
SwissprotQ9FX673e-86HRS1_ARATH; Transcription factor HRS1
TrEMBLA0A2C9VQR91e-103A0A2C9VQR9_MANES; Uncharacterized protein
STRINGLus100342800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.12e-80G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  2. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]