PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034245
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 284aa    MW: 30184.6 Da    PI: 7.8732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034245genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY42.71.1e-131231661959
                  SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  19 efprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +  r+Y+rCt++   +C++kk+v+r ++dp++ e+tY+g+H+++
  Lus10034245 123 PRRRGYFRCTHQklyNCRAKKQVQRLDHDPDTYEVTYRGHHTCH 166
                  5679********999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-12120167IPR003657WRKY domain
PfamPF031061.2E-12121166IPR003657WRKY domain
SuperFamilySSF1182902.22E-12121167IPR003657WRKY domain
PROSITE profilePS5081111.577123168IPR003657WRKY domain
SMARTSM007741.5E-8123167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDQTLALLLH GCNLARHLES NLLPHINNSE ALSKSCDEII AVFLACKERL SLSDDPQQGG  60
LFGQPPWLMK CRTTPTPDQV ATTSTGKAME VAAVGPSSSS GGVRFGGGGA VASSSSTASQ  120
QRPRRRGYFR CTHQKLYNCR AKKQVQRLDH DPDTYEVTYR GHHTCHMSAT APSVGPPEEP  180
HAGPSATSAL QQVITAAAQQ QQSTARWAME FRLGRGVGVG GGGGGRDQHH HQQQVDFPVS  240
DMAAAMFSSG SSSTNASMDL IFNAAMDAHD QDKQSDDRGK GKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100342450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.23e-23WRKY DNA-binding protein 55