PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034183
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 419aa    MW: 45860 Da    PI: 8.5408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034183genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.78.5e-48251511128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  + pGfrF+Ptd el+++yL+kk++g++  + evi++v+ +k+ePwdLp k+v ++e++w+fFs+r +ky++g++++rat+ gyWkatgk+++v s ++
  Lus10034183  25 MFPGFRFSPTDVELISYYLHKKIDGHDKCV-EVIPQVEFCKHEPWDLPaKSVIKSETDWFFFSSRGRKYPNGSQSKRATELGYWKATGKERNVRS-GS 120
                  579************************777.99***************666667889*************************************9.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++g+k+tLvf+ grapkge+t+W+mhey++
  Lus10034183 121 SVIGTKRTLVFHLGRAPKGERTEWIMHEYSM 151
                  9****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5216166IPR003441NAC domain
PROSITE profilePS5100550.97825168IPR003441NAC domain
PfamPF023652.6E-2427150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGSTNYVDGG GVSRETQMSI EASSMFPGFR FSPTDVELIS YYLHKKIDGH DKCVEVIPQV  60
EFCKHEPWDL PAKSVIKSET DWFFFSSRGR KYPNGSQSKR ATELGYWKAT GKERNVRSGS  120
SVIGTKRTLV FHLGRAPKGE RTEWIMHEYS MLPSSNHESL VVCRLKKNVD FRGNQSCNGF  180
AEESAERRIM ETYAAECSAK KTSSSSASYS NEQMDSVSND SENKLSNNSA TPAATESSSR  240
HDTGLLDDMC RQGFSGREDD YYADILNDDI IKLDETCLTT AAAAAAAAAI PVPRATTAEV  300
PETAVADGEA NGEEKELPLW LMSQQGTASR RVKLGNRMRV GSVVVAPGAA GKKKGKKKWD  360
VGLVMLARNA RWNRVAWLLC AVMILGLVGM LVLLQGKGRA ADLVRRTAHI IVVGVQII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-402416719167NAC domain-containing protein 19
3swm_B3e-402416719167NAC domain-containing protein 19
3swm_C3e-402416719167NAC domain-containing protein 19
3swm_D3e-402416719167NAC domain-containing protein 19
3swp_A3e-402416719167NAC domain-containing protein 19
3swp_B3e-402416719167NAC domain-containing protein 19
3swp_C3e-402416719167NAC domain-containing protein 19
3swp_D3e-402416719167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034183
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609917.11e-117NAC domain-containing protein 89
RefseqXP_021609918.11e-117NAC domain-containing protein 89
RefseqXP_021609919.11e-117NAC domain-containing protein 89
SwissprotQ9XIN76e-84NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A0M5JKF01e-116A0A0M5JKF0_MANES; NAC transcription factors 92
STRINGLus100341830.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.15e-85NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]