PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033962
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 478aa    MW: 50142 Da    PI: 8.0279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033962genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125176227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG+C yG+rC+F+H++
  Lus10033962 51 DEADCIYYLRTGFCGYGARCRFNHPR 76
                 6799********************96 PP
2zf-CCCH39.21.1e-1296122127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  y+++ C++++rtG Ck+G++Ck++H++
  Lus10033962  96 YGQPVCQYYMRTGSCKFGASCKYHHPK 122
                  899**********************96 PP
3zf-CCCH35.22.1e-11143168227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C ++ +tG+Ck+G++CkF H++
  Lus10033962 143 GEKECTYYIKTGQCKFGATCKFDHPQ 168
                  7899********************97 PP
4zf-CCCH36.11.1e-11311336126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+++++tG Ck+G++C+++H+
  Lus10033962 311 PGQPECQYYLKTGDCKFGSSCRYHHP 336
                  5789*********************8 PP
5zf-CCCH35.22e-11359383327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +lC ++a+ G+Ck+G+ CkF H++
  Lus10033962 359 APLCTHYAQRGQCKFGSACKFDHPM 383
                  68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0514977IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-105176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-895122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.58695123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-795124IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-1096122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-6100122IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6143169IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089310338IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9312336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5314337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5316340IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7356383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3356384IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9359383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5360383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5361381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MYGRGQEGSQ SDPSSEWTTT APGPETGLEE GLWQLGLGGG EGESGYPERP DEADCIYYLR  60
TGFCGYGARC RFNHPRDRAA VLGAARAGGG EFPERYGQPV CQYYMRTGSC KFGASCKYHH  120
PKQALGSVAP VPLNYYGYPL RPGEKECTYY IKTGQCKFGA TCKFDHPQPP NVQVPPQSLP  180
PQIAPMASPL AAPALYPPPM QSPSVPSSQQ YGVLVARSPL MQSSYAQGPY GPMLLSPGGV  240
VSYPSWSPYP GPVSPVTQSP GTQSALGSSS LYGITQLSPS APAYTGAYAP LPSLIGPSSS  300
SQRDTSFPER PGQPECQYYL KTGDCKFGSS CRYHHPSELS APKSNLALSP LGLPLRPGAP  360
LCTHYAQRGQ CKFGSACKFD HPMGMSYSPS ASSLVDMPVA PYPVGSSLGT LAPSSSSTDL  420
RPELISGSSK ESSSSRIASS PSGFIGSTFS KSETASPSSM QFSGSLTGSS STAHASS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033962
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634959.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-156C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2C9WB840.0A0A2C9WB84_MANES; Uncharacterized protein
STRINGLus100339620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-114C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]