PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033699
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 465aa    MW: 52307.2 Da    PI: 4.4023
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033699genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.4e-16151551129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                  lp+  +F Pt+ elv++yL + v+g+ ++++   ++e d+y   ePw+L k     ++++ ++  y F+k +kk+++ k  +r +    g W+   ++
  Lus10033699  15 LPAAAKFIPTNTELVQHYLYNYVHGHMTPEQCYpVQESDLYGEkEPWELWKdhqvwSHRKPDEAAYLFTKLKKKSKNAKYFERRIGncGGSWHGEDSE 112
                  57889*********************988866679****99644*****6434443333345577**********998888775443589***99999 PP

          NAM  90 kevlskkgel....vglkktLvfykgrapkgektdWvmheyrle 129
                  +e ++ +g +     g k+ + +  ++++++e+ +W++ e+rle
  Lus10033699 113 NEFVKFRGGDglmwAGKKRKFKYE-NKKSETEHGKWFLYEFRLE 155
                  998887444445668899999886.7888889*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-1512170IPR003441NAC domain
PROSITE profilePS5100521.68515173IPR003441NAC domain
PfamPF023651.0E-917154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAIAPIINGD PLFSLPAAAK FIPTNTELVQ HYLYNYVHGH MTPEQCYPVQ ESDLYGEKEP  60
WELWKDHQVW SHRKPDEAAY LFTKLKKKSK NAKYFERRIG NCGGSWHGED SENEFVKFRG  120
GDGLMWAGKK RKFKYENKKS ETEHGKWFLY EFRLENVESK SSFETAICKL KINGSPFVEK  180
ELGKMMNRKR KLDDVLGGIL HWELEFRGPA LKTLQLDRKQ SNSDVAAVPV VIENEAAAFQ  240
ASGDEIVKET TAFHGSGEIE NETVPFSDVL DKDPNSERLA FTLEELFGGG SEVVVPLLPT  300
EIASETTPYE KEKETVSLEV DHDDSELGDF ALFLEEELES EPEAVGGDVH INVVNVNEEE  360
EAPKNGGSIK AKTDTEEITR IGDDQAAICT SKDGAFNGGD QEVQMRDCGG VSTKMVQQQQ  420
PWSLPQWLLD DTEEDNNDCI PIGNLWDCDD SLPLPSSYVS YYRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033699
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100336990.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.13e-07NAC domain containing protein 46