PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033517
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 477aa    MW: 53259 Da    PI: 4.61
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033517genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2231.4e-68914653373
         GRAS   3 elLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                  +lLl +Aea+++++  l ++++a+l  +       +s + + ++Rl+ +ft++L ++   s     + +  ++ ++ +ss +  a+++++e+sP++kf
  Lus10033517  91 SLLLMAAEAIDAENWLLCSSVIAELMIHnqsnslfSSTSCSFLERLTGFFTQGLIQKNKISF----DGVDRNDRHSADSSVSSPAFHILQELSPYIKF 184
                  689************9999999988543222223344444679***********87766544....555556666667899999************** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL..asRp....egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak 184
                  +h++aNqaIlea  +++ +H++Dfdi++GlQWp+L+  L  a+R+    ++p+s+R+T++  p+++  + ++++tg+rL+++A++++++fef+++   
  Lus10033517 185 GHFAANQAILEASFENRNIHVVDFDINEGLQWPPLMADLlaAARSypnqNSPASFRLTALILPNASaTESAVHQTGRRLKEYADSINLTFEFDTI--- 279
                  ************************************99854488888766688*******9999888999***********************97... PP

         GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflealeyysalfdsleaklpr 277
                    +  +l+++rv+pg al+ n++++  + ++++ +l +   ++L    +lsP++vv+ve+e+  +s+     +F++ f+ea+e+ysa+ +sl+a    
  Lus10033517 280 --NITDLDTIRVDPGQALISNCMIHQLHSPNRNFTLVN---TFLTSSVRLSPRLVVLVEEELFNSSKtipsmPFADFFCEAIEHYSAISESLAADGRI 372
                  ..66677999**************99999999999999...********************54433335555********************999555 PP

         GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerlee..aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  + + + ++E+ +lgr++v+ + +       + e +  W++ +++    Fk+vp+s+++++qa++l++ +   g+ v++e+  l l+Wk+rpL ++S W
  Lus10033517 373 HGKGMEMMEKDVLGRRVVDSLVQFPCG---ESE-KFGWENGFDSlkGEFKAVPFSTTNVSQANYLVSLFC-GGHWVQHERCRLGLCWKSRPLATASIW 465
                  66999*************999888877...344.446*****985468*********************9.5566666666666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.03763447IPR005202Transcription factor GRAS
PfamPF035145.0E-6691465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MMEIEEVVAH FPFNPSSYEQ QCSSSMEEAI SSLENTEEPF HFNNSDCWEI RLMEIESDLF  60
MDLITSSVYP LNTPLPEEEH EENISSSRLP SLLLMAAEAI DAENWLLCSS VIAELMIHNQ  120
SNSLFSSTSC SFLERLTGFF TQGLIQKNKI SFDGVDRNDR HSADSSVSSP AFHILQELSP  180
YIKFGHFAAN QAILEASFEN RNIHVVDFDI NEGLQWPPLM ADLLAAARSY PNQNSPASFR  240
LTALILPNAS ATESAVHQTG RRLKEYADSI NLTFEFDTIN ITDLDTIRVD PGQALISNCM  300
IHQLHSPNRN FTLVNTFLTS SVRLSPRLVV LVEEELFNSS KTIPSMPFAD FFCEAIEHYS  360
AISESLAADG RIHGKGMEMM EKDVLGRRVV DSLVQFPCGE SEKFGWENGF DSLKGEFKAV  420
PFSTTNVSQA NYLVSLFCGG HWVQHERCRL GLCWKSRPLA TASIWVPKGL KGKGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3117146898381Protein SCARECROW
5b3h_A3e-3117146897380Protein SCARECROW
5b3h_D3e-3117146897380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033517
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371003.11e-123nodulation-signaling pathway 2 protein
RefseqXP_024447319.11e-123nodulation-signaling pathway 2 protein-like
TrEMBLU5FEG11e-121U5FEG1_POPTR; Uncharacterized protein
STRINGLus100335170.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-39GRAS family protein