PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033487
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 829aa    MW: 91762.5 Da    PI: 9.7031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033487genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-06144164425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                  elC+ f + G C++G+ C+F H
  Lus10033487 144 ELCKQFVA-GRCRRGSHCHFLH 164
                  89**9999.************* PP
2zf-CCCH21.83.3e-07225245425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                   +Cr+fa+ G C+ G +C+F+H
  Lus10033487 225 TPCRYFAA-GNCRNGTSCRFSH 245
                  59**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.08140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5142165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5144165IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013221247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5224246IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4225245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742226248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4226245IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MSSSAGRKRS SKWDLGEESR NSFDNQQNNG KAGLSYHETD NGNRSRWSTM DRRGSLGDHR  60
MVDDEYGKTS GWERDGSYGP RMSPGLEEWR HRSRRRSPSK EWKRARRSRS RSQSRSRSRS  120
PGHSLRRDSS TSDRIRNRSG VSAELCKQFV AGRCRRGSHC HFLHESAPSY EDNWDGRGKS  180
LPSRYSDAPA KEPTNDFVRE RDIDRRHRDP SPDRPNEPIR RAIETPCRYF AAGNCRNGTS  240
CRFSHQGQGD NTSPERRPRN ERRLMDQNMD NREKMWDGPK WRDVDNYSEA SKSTRDVEKQ  300
WNGDKYSNLN NNSDPAKLID DRSHKTGWSV DNSRVQSLAG RTTLKQHQSP TNLVENDQNK  360
SLKVKGENIG DNRHLTEQSS NNIWEGDMEM SPEWNYGRSN HIDKGPPQPG QDTDITVVPL  420
QPLIHETSSV QNDYYSRDLG AAVGSSLNRN TAVRASNGSH INSSGSILAA SSLNRNGVGL  480
NALPHLPTMN SVEQSRVGNA HEHDYLRGVT GTSPMSPKPL NIGQGTGDRS NIAVNSSTPF  540
TQNIVSGEQL ATLTNLSVSL AQLLANGHQL PQLYATHSSN PASDHVKQYD PICDSIEPGN  600
QGVGNNLNDQ KEKSTGDHGE APMAATNGSN DKSGKSNELK PGVESGIIKE SSGKNAKDSS  660
SKVKESKAGE ENIDADDKDD EEDKKNKEAK GSRAFKFALV EFVKEALKPA WKEGQVSKDS  720
YKNIVKKVVD KVTGSVQVAN IPQTQEKIEQ YVSASKPKMT KLVQTRSTPW TAQVCTLQGC  780
NSGIPRVASS LQSLGNILDA SDRSRNAPSG MSSTVNHREG VIKHVVLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033487
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100334870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-13C3H family protein