PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033281
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 362aa    MW: 40119.6 Da    PI: 4.3706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033281genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.49e-13161591128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eev.ikevdiykv.ePwdLpkkvkaeek.....ewyfFskrdkkyatgkrknra.........tksg 81 
                  lppG+rF+P++eelv  yL ++++g +l+    + i  +d+y++ ePw++ +++++e+      ++y  +k +k+++ +k++            t+ +
  Lus10033281  16 LPPGYRFNPSEEELV-GYLFNHISGFSLQNiLFCpIVVCDLYSSvEPWEIWSRCQSERFglpigDVYVITKLKKSKTCSKKSATCstrfdrfigTSGA 112
                  79*************.89999999999555133359999*99755*****855544332344446688877777666443333323455555667788 PP

          NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +W +t k ke+++    ++l gl k + + + ++p+  +  W++ ey++
  Lus10033281 113 TWFQTNKGKELKVDcgLQKLSGLSKGFKYKNLKSPE--NGCWLLTEYTI 159
                  9**999999888875566779********9777777..99*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-1113169IPR003441NAC domain
PROSITE profilePS5100517.47216178IPR003441NAC domain
PfamPF023652.0E-817159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEEQVEQQP QHLQMLPPGY RFNPSEEELV GYLFNHISGF SLQNILFCPI VVCDLYSSVE  60
PWEIWSRCQS ERFGLPIGDV YVITKLKKSK TCSKKSATCS TRFDRFIGTS GATWFQTNKG  120
KELKVDCGLQ KLSGLSKGFK YKNLKSPENG CWLLTEYTIS FDDGKTYLEE AICRLKNHHK  180
TSEEGADPEP PATGKRKFDA DAGCSSQQSS KVARICDGAP TISPDLIPSS ASDDGVGSSS  240
SMPNIHNALL LPTDQSHNSE DEVGFYLDDD VWALLEEEIE PDSTGQQNQS LVEPNQDLIS  300
FSSDSSLNSK VPLIDDNFIN RLSSPSYIPC SFDSDLGYES DMLFASQNLR GSSFSYLQDL  360
P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033281
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100332810.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.27e-09NAC domain containing protein 38