PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033279
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 391aa    MW: 43009.9 Da    PI: 4.8784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.41.3e-14161531128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdL.pkkvkaeek.....ewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                  lppG+rF+P++eelv  yL ++++g +l+   +  +  +d+y++ ePw++ p+ +++e+      ++y  +k +k++++++r  r++    g+W++t 
  Lus10033279  16 LPPGYRFNPSEEELV-GYLFNHISGFSLQNIPFcpVVVCDLYSSaEPWEIwPR-CQSERFglpigDVYVITKLNKSKTSSTRFDRSVGisGGTWHQTS 111
                  79*************.89999999999655343237777999766*****544.3332223445578******************644449******* PP

          NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  k k++       ++l g+ k + + + ++p+  +  W++ ey++
  Lus10033279 112 KVKKMEGIdcgAQKLCGVCKGFNYKNLTSPE--NGCWLLTEYTI 153
                  *998876666678889*******99767666..89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1413169IPR003441NAC domain
PROSITE profilePS5100518.58816172IPR003441NAC domain
PfamPF023654.8E-1117153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEEEQVEQQP QHLQMLPPGY RFNPSEEELV GYLFNHISGF SLQNIPFCPV VVCDLYSSAE  60
PWEIWPRCQS ERFGLPIGDV YVITKLNKSK TSSTRFDRSV GISGGTWHQT SKVKKMEGID  120
CGAQKLCGVC KGFNYKNLTS PENGCWLLTE YTISVDGGKT YSEEAICKLN HHKTSEGADP  180
QPPTTGKRKF DAAAGCSSQP SSKVPRICDG APTLSPDLIS LSASNHGVGS SSSSSMTNIH  240
NTLPTNQSHN SVNEVGFNLD DNIWALLEEE IEPDSTGQQS HNSESEVGFY LDDDVLALLE  300
EEIEHGSTGQ QVQSLVEPNQ DLISFSSDSS LNSKLLFKLS VRAFDLPSTI EADGRGQQHD  360
LTGNCMRLLP KMKKHGLLDV EVHNQRSYHI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100332790.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-11NAC domain containing protein 38