PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033255
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 493aa    MW: 54138.1 Da    PI: 7.303
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033255genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.2e-09159182326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   ++C +++ +G C++Gd C+F H+
  Lus10033255 159 KPPCEDWMSSGKCSRGDACPFLHS 182
                  689********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6671237IPR000571Zinc finger, CCCH-type
SMARTSM003560.441236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22156184IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6157183IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7159182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5159183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5161180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.0E-35181480IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0085188227IPR001680WD40 repeat
SuperFamilySSF509782.93E-38190484IPR017986WD40-repeat-containing domain
PROSITE profilePS5029410.127195236IPR017986WD40-repeat-containing domain
PROSITE profilePS5008210.475195236IPR001680WD40 repeat
PROSITE patternPS006780214228IPR019775WD40 repeat, conserved site
SMARTSM0032052267304IPR001680WD40 repeat
PROSITE profilePS5029417.93274401IPR017986WD40-repeat-containing domain
SMARTSM003200.0072315352IPR001680WD40 repeat
PfamPF004000.087321352IPR001680WD40 repeat
PROSITE profilePS5008211.244322361IPR001680WD40 repeat
PROSITE patternPS006780339353IPR019775WD40 repeat, conserved site
SMARTSM003200.0017355392IPR001680WD40 repeat
PfamPF004000.039357391IPR001680WD40 repeat
PROSITE profilePS500829.305362401IPR001680WD40 repeat
SMARTSM00320180443479IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MVLPTNVYQR VKSTTVCHFW KQGKCNKDPC RFVHGDSPPQ QQHRSVVVRS NIYRRAPPTS  60
SSSTRSVQGK CVVVQKPKTV EVATKEKPPC EGKCVVVQKP KVAAEVVTEE KPPCEIKGEV  120
LQKPKVAAEV VTEEKLPCDG KCEVVQKSKV AAEVATEEKP PCEDWMSSGK CSRGDACPFL  180
HSWFYGDAFS MLARLEGHCN NVSGIDLSFW WKTLFSASND GIVHAWDCPT GKLTSTLDVG  240
EKIGCLINGG DWLFLGLSNS VKAINTRSRA EYNLSGPTGE VYALEIGLGV LYAATRDGMI  300
VAWRVDLSVE QHVSPFQPPI FLNGHKSAVI CLKFGVGRLF SGSMDGTIIT WDNKTLECIE  360
TTKGHDDAVM SLLCYDSFLL SCSLDQKIKV WALNEERILE VVYTHEDEDC GALGLCGVEN  420
PNGNAILLCS WNNDTVSVYE LPSFKKRGKM YSKGEVRTMR RVNDILFTGD ATGIVTVWRL  480
AQPSAKAVVE SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-161924808322Tako8
6g6n_A1e-161924808322Tako8
6g6n_B1e-161924808322Tako8
6g6n_C1e-161924808322Tako8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100332550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.12e-92C3H family protein