PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032887
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 718aa    MW: 77709.5 Da    PI: 6.0484
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032887genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32300357260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Lus10032887 300 DDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCPVKKKVERSH-EGHITEIIYKGAHNHPK 357
                  8****************************************.***************85 PP
2WRKY102.81.9e-32504562159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Lus10032887 504 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 562
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.306294358IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-29298358IPR003657WRKY domain
SuperFamilySSF1182903.27E-26298358IPR003657WRKY domain
SMARTSM007744.1E-37299357IPR003657WRKY domain
PfamPF031062.0E-25300356IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-37489564IPR003657WRKY domain
SuperFamilySSF1182901.96E-28496564IPR003657WRKY domain
PROSITE profilePS5081138.32499564IPR003657WRKY domain
SMARTSM007741.9E-37504563IPR003657WRKY domain
PfamPF031067.3E-25505562IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MAGLDDNVAI IRDWLPPTPS PRAFFSTILG DDMSTRPNPD QSGETRMDGL FFGTRQLMTT  60
TEGNAGTRDA ATVSQVTDSG PFAEHNNTNT TPRGGLVERM AARAGFNVPK LNTESIMRST  120
DLSLNPQSPY LTIPPGLSPT SLLDSPVFVN SLAQPSPTTG KFSFFPNSNS KGLMSEPSYT  180
SKDNFFEDFN SSFAFKTIPE MNSPFLTCPP TKVTPATLQQ QFPNTEASVQ SENSHAQNKQ  240
SLHFASDFSN SDKENYGKVI ANDTVGGGNA ANSPTLDDQD EEGDRGGDSS IVGAGGAPAD  300
DGYNWRKYGQ KQVKGSEYPR SYYKCTHQNC PVKKKVERSH EGHITEIIYK GAHNHPKPPP  360
SRRAAIGGSS SYSLMDMPLE NPEQTGAEND PVWAGTHNKG TADNNIEVTS SASAAPEFGN  420
FQAQNRAHFE SSEAAVDASS TFSNDEEDDD RATHASVGYD GEEDESDSKR RKIETFTAAE  480
MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNAGCTVRKH  540
VERASHDLKS VITTYEGKHN HDVPAARNSS HVGSGASSTT PAPYQSAAQL SRPEPPQVHN  600
SMNRGCDRSA AFGTFGRQQQ MVGGPSSNGF SFGMNQPGFA NLAMAGLCAG QPKMPMMPSM  660
NPYLAAGQQQ RTFGEMGFMM PKGEPKVEPV SESGLNLSNN QAMYQQFMNR LPLGPHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36300565878Probable WRKY transcription factor 4
2lex_A1e-36300565878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297890.0EU829789.1 Linum usitatissimum clone LU0006A11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021678272.10.0probable WRKY transcription factor 2
RefseqXP_021678273.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM9TIF00.0M9TIF0_JATCU; WRKY transcription factor 11
STRINGLus100328870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]