PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032871
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 393aa    MW: 44486.7 Da    PI: 7.0308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032871genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17351141398
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++l +p +f+++  +k   +  +tl+ + g +Wev l    +sg+ ++ +GW+eFvk++ Lke D +vFk++g s f   v++f+
  Lus10032871  35 HHQLAMPETFFANQRKK--LPECVTLKGPGGDTWEVGL--AVRSGTLFFDQGWEEFVKDHLLKEHDLLVFKYNGVSHF--EVMIFD 114
                  68899*****9666433..5667***************..********************************999999..888876 PP
2B343.84.7e-14291374287
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    +++p +v ++  +++p   +++h  ++  + ++tl+    +g++W+ k+ y+ ++++  l++GW++F+ +n+L+e D++vF  dg 
  Lus10032871 291 YVIMKPTHVYRKFFMSIPCGWMNKHlnMLL-KHPVTLK---MKGKTWNTKFVYQETRKSGGLSAGWRSFAGDNNLQEFDICVFNPDGP 374
                  5689999******************86333.2554555...478*********77777778**********************97764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1922114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.35323116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-1924114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-1625114No hitNo description
SMARTSM010196.6E-1426116IPR003340B3 DNA binding domain
PfamPF023621.3E-1435114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-16290387IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-12290383IPR003340B3 DNA binding domain
CDDcd100174.37E-18290387No hitNo description
SuperFamilySSF1019361.55E-15290379IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66290389IPR003340B3 DNA binding domain
SMARTSM010191.2E-8290389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEEELSGGCR SWEEDMYWKH FQFTHFSQFL LPGYHHQLAM PETFFANQRK KLPECVTLKG  60
PGGDTWEVGL AVRSGTLFFD QGWEEFVKDH LLKEHDLLVF KYNGVSHFEV MIFDGVTFCE  120
KATSYFVKKS SGGKDVDNGI HSKRRLAGNS SGVIMATPIG QVRGSSLEKT AENDIGKVQP  180
SSQPAARPMM DDEFGTTPIL RPVQHPIIWE ATNFKKQKMS SGHIPDNETV KSEELSCSGE  240
REKEQDVRST PLSYGMVHDA PYISFRKVAT EVDKKKALLL AQEAVTLEGF YVIMKPTHVY  300
RKFFMSIPCG WMNKHLNMLL KHPVTLKMKG KTWNTKFVYQ ETRKSGGLSA GWRSFAGDNN  360
LQEFDICVFN PDGPFQTSMS LNVDIVRAVE EE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100328710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-44B3 family protein