PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032465
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 463aa    MW: 52488.3 Da    PI: 10.0939
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032465genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.86.8e-331423324130
          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................sss 68 
                  +kdrhski T++g+RdRR+Rls+++a+ fF Lqd+LGfd++s+t+eWLl+q+  +i+ l +t                                 +  
  Lus10032465 142 RKDRHSKIQTAQGPRDRRMRLSLKVARPFFTLQDKLGFDTPSNTVEWLLTQSRSQIDLLFSTstttttstisdtqaaaaimttmlkymttatdhkD-- 237
                  8*************************************************************9999999998888888888888888775433331.. PP

          TCP  69 sasec...eaesssssasnsssg.....................................kaaksaakskksqksaasalnlakesrakarararert 126
                    + c    +++s ss+     +                                      +++ +ak   ++++++ ++ + ke r kararar+rt
  Lus10032465 238 --MTCkssLDQDSTSST-----AnnttttittaptkvvkkrkmvdmkkktnntktkkkstTENNGEAKVTTNHHHHHDHHLVVKELRDKARARARQRT 328
                  ..233322222222222.....12334467777777888888888877766665555554333333455555555555566666777*********** PP

          TCP 127 rekm 130
                  r+k+
  Lus10032465 329 RDKK 332
                  *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-33142332IPR005333Transcription factor, TCP
PROSITE profilePS5136930.695142200IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.946314331IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MWEDYYNNSN TNQHHMNTKH NHHHHLQHHL LPNISAGGGG GFFQIPPPNS SSNSMFNFVQ  60
SSSSSFVSSN TAPVIADSDD QLLFHHPVWP PPPPPNHHHH HPLTMSTSDD QQYHQIPITA  120
AAAAPRSKKT SKTTVTRKRC WRKDRHSKIQ TAQGPRDRRM RLSLKVARPF FTLQDKLGFD  180
TPSNTVEWLL TQSRSQIDLL FSTSTTTTTS TISDTQAAAA IMTTMLKYMT TATDHKDMTC  240
KSSLDQDSTS STANNTTTTI TTAPTKVVKK RKMVDMKKKT NNTKTKKKST TENNGEAKVT  300
TNHHHHHDHH LVVKELRDKA RARARQRTRD KKLFYSSLLM LNRNNHESTT TTPTASSSSS  360
SSKSYGSCHH HDPLHHHHEQ LMMMFDSTNQ DEGKGDGFPI DHHLCLQQHF TTPPTTTLIP  420
HQHEHQIVTS NADQYYFQSF YKQWDATATY NNLQFATTRL PN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271KVVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032465
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8851371e-123HQ885137.1 Linum usitatissimum clone Contig989 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100324650.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-20TCP domain protein 12