PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032372
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 360aa    MW: 39850.2 Da    PI: 5.1144
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032372genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.1e-29150210259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrKYGqK++ g+++prsYYrCt++   +C++ k+v+rs+edp+++e+tY+g+H+++
  Lus10032372 150 DDGFSWRKYGQKDILGAKYPRSYYRCTYRstqNCWAIKQVQRSDEDPTIFEVTYRGTHTCS 210
                  8**************************99899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.895144207IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-28145210IPR003657WRKY domain
SuperFamilySSF1182901.15E-25148211IPR003657WRKY domain
SMARTSM007741.5E-37149211IPR003657WRKY domain
PfamPF031061.3E-26150209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MERSELSWEQ RTVVNELIQG MEVAKQLSCH LKGASAVEVA DSLIQRILSS YEKALLILNW  60
KNNGSSSSSM EQTLQAVVTG TTAAAVAATG SAGVPGSPLS RNGSPRSEDY DGSKDSYQVP  120
IDASKKRKAM PRWTDQVRMS SDNGLEGPID DGFSWRKYGQ KDILGAKYPR SYYRCTYRST  180
QNCWAIKQVQ RSDEDPTIFE VTYRGTHTCS YGQQTVPSPE KEEEQHKHNI RRHQNPLPPP  240
PPEEALKNLQ KGLKVDTQDL DNRETIPFTF PSTYECQNSN YSPSFLSPAT PEPNYYHQLS  300
PLVSSFGGGA QSLQLSDSEL AEIISAQTSA TSSPILDLDF PLESFDLVPN FSYPPGFFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19149209868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8300713e-49EU830071.1 Linum usitatissimum clone LU0015G04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509941.11e-137probable WRKY transcription factor 41
TrEMBLB9RCQ71e-136B9RCQ7_RICCO; Uncharacterized protein
STRINGLus100323720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-70WRKY family protein