PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032303
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 297aa    MW: 32514 Da    PI: 4.6061
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032303genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.5e-31141199259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D+++WrKYGqK++kgs++prsYYrC+s  gCp++k+vers++d+++++itY+ +H+h 
  Lus10032303 141 SDKWAWRKYGQKPIKGSPYPRSYYRCSSLkGCPARKQVERSTSDNSIFIITYTADHTHA 199
                  7**************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32126201IPR003657WRKY domain
SuperFamilySSF1182901.23E-26134201IPR003657WRKY domain
PROSITE profilePS5081131.617135201IPR003657WRKY domain
SMARTSM007742.7E-35140200IPR003657WRKY domain
PfamPF031067.0E-26142198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MADWDLDAVV RGCNSSNVPL IPNPSSSSSS SCPMELEFPV TSTGFCFEEY DDQLFDADLD  60
GLLEGLYKPF CNYQQPSSTL LTSDPPPPDQ LPAGVVVGPD LSASSSATSS VEQSNPVVKL  120
RKRKNQQKRV VEHVTEEAIC SDKWAWRKYG QKPIKGSPYP RSYYRCSSLK GCPARKQVER  180
STSDNSIFII TYTADHTHAL PTRRNSLAGT TRIKAAAPPA PPTSDEHHSL DKTLSVGSSS  240
NNIEEDLSHE VLVKVEEELQ SNNVDDFFST TSDVVFSDDL FPGGLGDLDG MFLNRW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21129201274WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100323030.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-34WRKY DNA-binding protein 27