PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 243aa MW: 27177.8 Da PI: 7.6871 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 208.1 | 3.2e-64 | 20 | 204 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...............qllaaeshldeslkeelleelkveeenlksnv 86 + eq+Cyv+Cn C+t+lavsvPs+s fk+vtvrCGhCt+ll vn++ + +++ +lde ++ +++ +nl + + Lus10032240 20 QIPEEQLCYVHCNICDTVLAVSVPSSSWFKTVTVRCGHCTHLLPVNMMRPNflptspspaiappfqLFSPTTTQLDEFSSNPNANTPSPPPQNLLMFN 117 56789*****************************************9988756666666666665444556666666666667777777777766655 PP YABBY 87 ekeesastsvssekl..senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++ ++++ e+pr+p v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Lus10032240 118 NQINDFGFQSAARFApdHNHQHLELPRPPLaVNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWAHFPHIQFGL 204 54444333322222232444555889987679*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.7E-64 | 22 | 204 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.37E-9 | 148 | 198 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.2E-6 | 152 | 198 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 3.89E-6 | 158 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSMSSMTLSL DHHYQQQQQQ IPEEQLCYVH CNICDTVLAV SVPSSSWFKT VTVRCGHCTH 60 LLPVNMMRPN FLPTSPSPAI APPFQLFSPT TTQLDEFSSN PNANTPSPPP QNLLMFNNQI 120 NDFGFQSAAR FAPDHNHQHL ELPRPPLAVN RPPEKRQRVP SAYNRFIKEE IQRIKAENPD 180 ISHREAFSAA AKNWAHFPHI QFGLMPDQPL KKKANTLLHH PPQEAEGGFF SSANVGVAAA 240 PY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032240 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021666324.1 | 2e-80 | protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 2e-61 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 2e-61 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A061G3I5 | 4e-77 | A0A061G3I5_THECC; Plant-specific transcription factor YABBY family protein | ||||
STRING | Lus10032240 | 1e-180 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-61 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032240 |
Publications ? help Back to Top | |||
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