PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 359aa MW: 41169.9 Da PI: 9.7681 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 110 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ +++H r H Lus10032208 110 YLCRVCGRRFYNNEKMMNHFRQiH 133 56*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.5E-6 | 30 | 109 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 9.21E-5 | 109 | 135 | No hit | No description |
PROSITE profile | PS50157 | 11.926 | 110 | 138 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 110 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 112 | 133 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 1.45E-11 | 127 | 264 | No hit | No description |
Pfam | PF01936 | 2.8E-5 | 172 | 267 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 1.5E-6 | 195 | 265 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MRYISQLKPQ NQLLNFFRFR RVSTESQPPL PRVAIFWDLD NKPPNSTPPF EAALKLKRAA 60 SSFGIVKYTV AYANRHAFSH VPLPVRQQRN GREQLNQLEN KGLIKPLEPY LCRVCGRRFY 120 NNEKMMNHFR QIHERENQKR VNQIESARGK RRVNLVGKFA MKMQKYKNAS REVLTPKVGY 180 GLADELRRAG FWVGEVSSKP EAADVALKER MVDVMDKRKA EYLVLVSDDS GFLGVLKEAK 240 SRCLKTVVVG NMMEEGAKLK RVADAGFSWQ EVLMGKAKKE GASVVEKWSD RDVLERLEWR 300 FDPEKEKSAY AAVNQFYSCN ADADHEGFDD DGYFDGDGVD VVKKEDSGSW WELDSESR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032208 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571651.1 | 1e-166 | uncharacterized protein LOC8272138 | ||||
TrEMBL | B9RBR6 | 1e-165 | B9RBR6_RICCO; Nucleic acid binding protein, putative | ||||
STRING | Lus10032208 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7500 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-137 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032208 |