PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032129 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23757.6 Da PI: 8.1443 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a g++Rt+k+c++rw++yl Lus10032129 22 KGPWTMEEDLILINYIANHGEGVWNSLALSAGLKRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE+ l+ d++ ++G++ W++Ia++++ gRt++++k++w++ Lus10032129 75 RGNITLEEQILIMDLHSKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 118 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.325 | 17 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 18 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.11E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-12 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-9 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 23.916 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 73 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.75E-11 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MECRTNQPSK EATGGGGEGI RKGPWTMEED LILINYIANH GEGVWNSLAL SAGLKRTGKS 60 CRLRWLNYLR PDVRRGNITL EEQILIMDLH SKWGNRWSKI AKHLPGRTDN EIKNYWRTRI 120 QKHLKPSKLQ SSSPPSSGVD HHHQLDTSHT SQLVSGYNHY YHGADPMEAM MVAECSGSNT 180 TQSDQHSSFE GRHWSMEELW SMELFNAGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 16 | 124 | 1 | 108 | B-MYB |
1h8a_C | 1e-23 | 20 | 124 | 25 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032129 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB617826 | 1e-106 | AB617826.1 Linum grandiflorum MYB21 mRNA for transcription factor MYB21, complete cds, cultivar: Red Flax. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253730.1 | 4e-79 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 2e-73 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | G9M8Q2 | 1e-101 | G9M8Q2_9ROSI; Transcription factor MYB21 | ||||
STRING | Lus10032129 | 1e-155 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 9e-71 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Lus10032129 |
Publications ? help Back to Top | |||
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