PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032036
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 355aa    MW: 40276.8 Da    PI: 9.5388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032036genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041194215323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ C++ ++++ +L  Hi+  H
  Lus10032036 194 CSVCHRAYPTSRLLSLHISEaH 215
                  ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035583166190IPR015880Zinc finger, C2H2-like
SMARTSM003556.9192215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194215IPR007087Zinc finger, C2H2
SMARTSM003550.02230255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MKGLKCTVSG PSEEAQYLNA LRQDSLYEYY GIYSFQYQPK ERRSNGKVHR SYKTARSNFH  60
KSRENCSTVR LLKFLNQEDQ LTSKVLQICL LAGDHLAVAM MVVDVDPKSE YGFPYWNPVR  120
RRFSPESPFF ESGNIERELL AKQIALDLGE DQKQLLSSMD EDAEVMFCPI AGCRAPLSTM  180
GFENHYISQH TAACSVCHRA YPTSRLLSLH ISEAHDSFFK AKVARGYPMY ECLVEGCGLK  240
FKSYKSRQKH LVDKHKFPAS YDFFKKGHHL SKKAREKIHR NKTTTTTTRK NDEEGSSKME  300
ADEEVENLTS ALSKMTTGST PKSVSFGRGN ARGLAFVPRS VQRDVKKPDP TPRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021677109.11e-107zinc finger protein 511-like
TrEMBLA0A067LCT11e-105A0A067LCT1_JATCU; Uncharacterized protein
STRINGLus100320360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.16e-98zinc ion binding;nucleic acid binding;zinc ion binding