PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 28817.6 Da PI: 8.2335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.4 | 3.1e-28 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlsk 95 lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+++ d ++ P+ p +++ yfF+k d +++ +n+ k gyWk+tgk ++++++ Lus10032004 14 LPIGYRFRPTDEELIVHYLRRKVFGLPLPA-SVIPDLnDPSTALPSGNP------SEKRYFFCKGDDHNR----SNKivEEKGGYWKHTGKARHIFAA 100 699***************************.899998455555555444......4678*****999764....344214569*************99 PP NAM 96 ...kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++lvg++++Lvf +g+++k + +Wvmhe+ l Lus10032004 101 sssNNQLVGIRRSLVFQthNGKRNKNQTHKWVMHEFCL 138 8878888*********8667899999999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-33 | 8 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.567 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-22 | 15 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEKQSMNGGG GIKLPIGYRF RPTDEELIVH YLRRKVFGLP LPASVIPDLN DPSTALPSGN 60 PSEKRYFFCK GDDHNRSNKI VEEKGGYWKH TGKARHIFAA SSSNNQLVGI RRSLVFQTHN 120 GKRNKNQTHK WVMHEFCLVG FVTIPFTNQI SMVKVGEWVL CSVLQKKRRA STNANKKKLI 180 SRCSTSPNPV RDQDSMDFRV DELSDAGPSC DDHEEEEEEE GKVGSLSGIT ELSSTKSSSS 240 SGLLLVEEED ITVHPMLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-18 | 12 | 170 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-18 | 12 | 170 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-18 | 12 | 170 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-18 | 12 | 170 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-18 | 12 | 170 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-18 | 12 | 170 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-18 | 12 | 170 | 15 | 169 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10032004 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-31 | NAC domain containing protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Lus10032004 |