PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10031767 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 24636.2 Da PI: 5.198 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.7 | 5.5e-50 | 33 | 159 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 pGfrFhPtdeel+++yL++kv++k+l++ e ik+vdiyk++PwdLp+++ ++ke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+s +++ Lus10031767 33 LPGFRFHPTDEELLSFYLRRKVDNKPLSI-ELIKQVDIYKYDPWDLPRSTGDGDKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSMaGDN 129 59***************************.89***************88889999*************************************996777 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkktLv+y+g+a kg+ktdW+mhe+rl Lus10031767 130 CIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 159 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.908 | 32 | 181 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-53 | 33 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-25 | 34 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MNSSTVTSDD NCDHDHRDRE EEEEEEEDDD VSLPGFRFHP TDEELLSFYL RRKVDNKPLS 60 IELIKQVDIY KYDPWDLPRS TGDGDKEGYF FCRRGRKYRN SIRPNRVTGS GFWKATGIDK 120 PVYSMAGDNC IGLKKTLVYY RGSAGKGTKT DWMMHEFRLP TSDQTGTNNI NGYITSSESS 180 KLTSAQEASH VPLKQLAGQD GKEPVKWAGW VSYELG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 23 | 187 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 23 | 187 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 23 | 187 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 23 | 187 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 23 | 187 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-46 | 23 | 187 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 23 | 187 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10031767 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615211.1 | 1e-86 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 1e-76 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2C9VRP8 | 3e-85 | A0A2C9VRP8_MANES; Uncharacterized protein | ||||
STRING | Lus10031767 | 1e-161 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-76 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10031767 |