PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031748
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 612aa    MW: 68172.5 Da    PI: 5.8797
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031748genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.76.8e-1022055961374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklfsevsPi 90 
                  lv+lLl+cAeav  +d++la++lL+++   ++p gd++qR+ ++f+ +L++rl+   +++    +  +    n         +++l a++l+++++P+
  Lus10031748 205 LVHLLLACAEAVGCRDTRLAESLLNQIWSSVNPWGDSLQRVSHCFAMGLKSRLSLLLNNVNPNGTFANGGAANdvsssistGEQRLEAFHLLHQTTPY 302
                  68**************************************************9986555544333222222223345566688999999********* PP

         GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.....skeeleetgerLakfAeelgvp.fefnvl 181
                  + f++++aN+aI++a+ g++ +HiiD++ ++ lQWp+Ll++L+sRp+gpp ++RiTg+ +++++      + ele+  + La+ A+++g++ fefn++
  Lus10031748 303 IAFGFMAANEAIVQAATGKNYLHIIDLGTEHTLQWPSLLRSLSSRPDGPPaRIRITGLMNKNNNdpilnLALELESRMKSLAREARSIGITgFEFNLI 400
                  **********************************************88777*********988889998899999999************66****97 PP

         GRAS 182 vak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..l 275
                    +  + + ++ e+L+++pgE+l Vn v++lh++++es  + +   ++L+++k+l P++++vveq+a+hn++ Fl rfle+l+yysa+fdslea   l
  Lus10031748 401 -PDtvSPSLFNSETLDLRPGETLFVNGVMNLHKFVKESRGSLK---AILQAIKKLAPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEAIpcL 494
                  .441367899*************************88777666...9*********************************************987669 PP

         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg....yrveeesgslvlgWkdrpLv 368
                   r+s er+k+E + +g+ei+n+va eg++r+erhe++ +Wr++l++aGF++v++  k ++qa++l++ ++ +dg    +++ +e+g ++lgWk+rp++
  Lus10031748 495 QRNSAERMKMETRHFGEEIRNIVAYEGSDRVERHERADQWRRQLGRAGFQAVEM--KCMSQARMLMSVYGcGDGddggFTLASEKGFMLLGWKGRPIL 590
                  9999***********************************************987..5899*****9999888877778******************** PP

         GRAS 369 svSaWr 374
                   +SaW+
  Lus10031748 591 LASAWQ 596
                  *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.61179573IPR005202Transcription factor GRAS
PfamPF035142.4E-99205596IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MESMNNILSF PADDISTLLN SHDLAIRRFC PARLNHEPPF GPNFGTDVAY HQQLMDRERI  60
SASSSSEEIH YINDDNTPYY YYHDHDISVV GATSITHRNG RSEVDEFVNG FINADPINHT  120
SLHLFQDEME TFDFMFDHHR DHSPPMVMAE HDHEMDMINS SSFQDLLALP SHGDVPRMSV  180
DSDSDYGQGQ DQPGAAEAVD QGLTLVHLLL ACAEAVGCRD TRLAESLLNQ IWSSVNPWGD  240
SLQRVSHCFA MGLKSRLSLL LNNVNPNGTF ANGGAANDVS SSISTGEQRL EAFHLLHQTT  300
PYIAFGFMAA NEAIVQAATG KNYLHIIDLG TEHTLQWPSL LRSLSSRPDG PPARIRITGL  360
MNKNNNDPIL NLALELESRM KSLAREARSI GITGFEFNLI PDTVSPSLFN SETLDLRPGE  420
TLFVNGVMNL HKFVKESRGS LKAILQAIKK LAPTLLTVVE QDANHNGPFF LGRFLESLHY  480
YSAIFDSLEA IPCLQRNSAE RMKMETRHFG EEIRNIVAYE GSDRVERHER ADQWRRQLGR  540
AGFQAVEMKC MSQARMLMSV YGCGDGDDGG FTLASEKGFM LLGWKGRPIL LASAWQVHPH  600
HHHSSSSSSA R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-4821259525377Protein SCARECROW
5b3h_D9e-4821259525377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639806.10.0DELLA protein RGL1-like
TrEMBLA0A2C9UHF10.0A0A2C9UHF1_MANES; Uncharacterized protein
STRINGLus100317480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-71RGA-like 2