PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031639
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 476aa    MW: 53519.5 Da    PI: 4.2218
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031639genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.61.8e-17151551129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdi.ykvePwdLpk..kvkaeek...ewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                  lp+  +F Ptd elv++yL + ++g+ ++++   ++e d+ ++ ePw+L +  +++++++    +y F+k +kk+++ k  +r +    g W+   + 
  Lus10031639  15 LPAAAKFIPTDTELVQHYLYNYIQGHMTPEQCYpVQESDLyCEKEPWELWRdhQIRSHREpdeAVYLFTKLKKKSKNAKYFERRIGncGGSWHGEDS- 111
                  57889*********************988866669999972578*****6334444433333277**********998888775443589***8776. PP

          NAM  90 kevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   +v++k     ++   g k+ + +  ++++++e+ +W++ e+rle
  Lus10031639 112 GNVFVKfrggdGSMWAGKKRKFKYD-NTKSEAEHGKWLLYEFRLE 155
                  4555555666444558999999986.7888889*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-1612159IPR003441NAC domain
PROSITE profilePS5100521.79315173IPR003441NAC domain
PfamPF023658.1E-1117154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAIAPIIVSD SLFLLPAAAK FIPTDTELVQ HYLYNYIQGH MTPEQCYPVQ ESDLYCEKEP  60
WELWRDHQIR SHREPDEAVY LFTKLKKKSK NAKYFERRIG NCGGSWHGED SGNVFVKFRG  120
GDGSMWAGKK RKFKYDNTKS EAEHGKWLLY EFRLENVESK SSFETAVCML KMNGSPFAEK  180
ELGKMMTRKR KLDDILGDIL HQELEFPGPA LKKLQLDRKQ SNSVDIAVPI VIQNETAAFQ  240
ASVKDTTAVP AFQNETMPFI DVLDKDPNSE RFTFTLEELF GGGSEPEKTE ESSVEVAVPL  300
IPTEIDSETT PYETEQETVS LEVDPDVSEL GDFALILAEE LESSSELPEA VGGDVHNIAN  360
VNEEEEAPKN DGSIKSKTDT EGPRIGDDQP AISTGKDGAF NGGEAEELVQ MRDCEGVSTK  420
MVQQQQPWSS WSLPQWLLDY SEDEEDSNDY IPIDNIWDFD DLLPLPSSYV SSNHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100316390.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.16e-07NAC domain containing protein 63