PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GATA | ||||||||
Protein Properties | Length: 165aa MW: 17879.7 Da PI: 10.5923 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.6 | 3.4e-18 | 29 | 61 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C+ C++t+TplWR gp g+k+LCnaCG++y+kk Lus10031464 29 CRDCKATSTPLWRFGPAGPKSLCNACGIRYAKK 61 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.75E-13 | 21 | 65 | No hit | No description |
PROSITE profile | PS50114 | 12.176 | 23 | 58 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.1E-14 | 23 | 74 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.4E-16 | 27 | 62 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.62E-12 | 28 | 74 | No hit | No description |
Pfam | PF00320 | 3.8E-16 | 29 | 62 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKVLQNSTEK SLVFGDEEQK KEKEMQKSCR DCKATSTPLW RFGPAGPKSL CNACGIRYAK 60 KIRPDKKQAN SPSPPQQIAS SSSAAGTTSD EPSSSPTGPL KVRVVYSSPK GGVMFRRSLL 120 RAPPTPAMVV KKQKYGKRKV RKLTEEEVQA ARCLVALSSC SDFA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031464 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10031464 | 1e-116 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 1e-13 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
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Phytozome | Lus10031464 |