PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031322
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 417aa    MW: 46257.5 Da    PI: 7.0888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031322genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-1759103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE++++++a k++G g W++I +++g ++t+ q++s+ qk+
      Lus10031322  59 REKWTDEEHQKFLEALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQKF 103
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1753107IPR009057Homeodomain-like
PROSITE profilePS5129421.36954108IPR017930Myb domain
TIGRFAMsTIGR015578.8E-1657106IPR006447Myb domain, plants
SMARTSM007178.6E-1458106IPR001005SANT/Myb domain
PfamPF002492.5E-1559102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-105999IPR009057Homeodomain-like
CDDcd001675.63E-1261104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEATASSQDR IQEARRDMSV SGGDYYEDNN DGEQLMELNS STSQHLLKVR KPYTITKQRE  60
KWTDEEHQKF LEALKLYGRG WRKIQEHVGT KTAVQIRSHA QKFFSKVVRE TTGGSENLIK  120
PTEIPPPRPK RKPLHPYPRK CTDVSNQFET SLSPYLLSME RESHSPTSLS TVVLESPVSE  180
ALNRSSSLTS CTSDVQSSSL HPNEKESEPI GSDSPPPGNL PSSRRRSSSG PTMEKLPTVA  240
KNAASASTVA VLAPSRSFKL FGKTVLVTDS EKYVDLELNI KLSIGLVDHD SSNRLVSTQQ  300
HTSFIEVKRE ITCFSEADFS LSPYVEDDTK HKEAVHERSC TGSDAGSTSE IATRERSMDV  360
GESQCQLPSS RVELSGSMSN TARGFMPYKR CLADRDMTSS LVASEERDQQ RARVCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047787.18e-87PREDICTED: protein REVEILLE 7-like
TrEMBLV4TXF86e-85V4TXF8_9ROSI; Uncharacterized protein
STRINGLus100313220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.15e-54MYB_related family protein