PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031271
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 382aa    MW: 43276.4 Da    PI: 6.6558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-05218237120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  Lus10031271 218 FSCPLCFKTFNRYNNMQMHM 237
                  89*****************9 PP
2zf-C2H214.40.00011302324123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Lus10031271 302 FMCRKCGKAFAVRGDWRTHEKNC 324
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66218245IPR007087Zinc finger, C2H2
SMARTSM003550.61218240IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-5218237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-6284322No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5298322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808302322IPR007087Zinc finger, C2H2
SMARTSM0035549302322IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDPYSNYFNN NGSFNSNNTS TTTNWYYNLP HHTNNYLNHL HSSSSNTANY FFSSSSSSSS  60
SNPYNYYKSS PPSSPPIREA LPLLSLSPIR PHHHFSMDVD HHQEEDHEEE DDDEEETVTV  120
ALHLGLPSHQ MVSSSSCGEK VVDEGRAVSS TADDHQDDVV VDDDDVECLN LSQNDHQQGH  180
SSNYTGGGVH HQGIINRINR GQYWIPTPAQ ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH  240
GSQYRKGPES LRGTQPTAML RLPCYCCATG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK  300
PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC TCGSDFKHKR SLKDHIRSFG NGHAAYGIDS  360
FEEEDDGGSD VEQQQQPMQD H*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384541.21e-149zinc finger protein WIP2-like
SwissprotQ8W0311e-130ZWIP5_ARATH; Zinc finger protein WIP5
SwissprotQ9SVY11e-129ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A498IPH81e-148A0A498IPH8_MALDO; Uncharacterized protein
STRINGLus100312710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]